Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03055 and AO356_03060 are separated by 0 nucleotides AO356_03060 and AO356_03065 overlap by 4 nucleotides
AO356_03055: AO356_03055 - hypothetical protein, at 682,060 to 685,008
_03055
AO356_03060: AO356_03060 - GAF domain-containing protein, at 685,009 to 685,491
_03060
AO356_03065: AO356_03065 - AAA family ATPase, at 685,488 to 686,378
_03065
Position (kb) 685
686 Strain fitness (log2 ratio) -1
0
1 at 684.058 kb on + strand, within AO356_03055 at 684.058 kb on + strand, within AO356_03055 at 684.058 kb on + strand, within AO356_03055 at 684.059 kb on - strand, within AO356_03055 at 684.059 kb on - strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.113 kb on + strand, within AO356_03055 at 684.114 kb on - strand, within AO356_03055 at 684.131 kb on + strand, within AO356_03055 at 684.131 kb on + strand, within AO356_03055 at 684.132 kb on - strand, within AO356_03055 at 684.132 kb on - strand, within AO356_03055 at 684.157 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.526 kb on + strand, within AO356_03055 at 684.527 kb on - strand, within AO356_03055 at 684.544 kb on + strand, within AO356_03055 at 684.544 kb on + strand, within AO356_03055 at 684.545 kb on - strand, within AO356_03055 at 684.545 kb on - strand, within AO356_03055 at 684.589 kb on + strand, within AO356_03055 at 684.589 kb on + strand, within AO356_03055 at 684.589 kb on + strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.590 kb on - strand, within AO356_03055 at 684.808 kb on + strand at 684.808 kb on + strand at 684.808 kb on + strand at 684.808 kb on + strand at 684.809 kb on - strand at 684.916 kb on + strand at 684.916 kb on + strand at 684.916 kb on + strand at 685.034 kb on - strand at 685.075 kb on - strand, within AO356_03060 at 685.329 kb on - strand, within AO356_03060 at 685.329 kb on - strand, within AO356_03060 at 685.329 kb on - strand, within AO356_03060 at 685.540 kb on + strand at 685.697 kb on - strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.843 kb on + strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065 at 685.844 kb on - strand, within AO356_03065 at 686.236 kb on + strand, within AO356_03065 at 686.404 kb on + strand at 686.404 kb on + strand at 686.405 kb on - strand at 686.405 kb on - strand at 686.405 kb on - strand at 686.405 kb on - strand at 686.405 kb on - strand at 686.405 kb on - strand at 686.405 kb on - strand at 686.450 kb on + strand at 686.450 kb on + strand at 686.451 kb on - strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.462 kb on + strand at 686.463 kb on - strand at 686.463 kb on - strand at 686.463 kb on - strand at 686.463 kb on - strand at 686.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 684,058 + AO356_03055 0.68 +0.1 684,058 + AO356_03055 0.68 +0.2 684,058 + AO356_03055 0.68 +0.7 684,059 - AO356_03055 0.68 +1.3 684,059 - AO356_03055 0.68 -1.1 684,113 + AO356_03055 0.70 +0.2 684,113 + AO356_03055 0.70 +1.2 684,113 + AO356_03055 0.70 -0.6 684,113 + AO356_03055 0.70 +0.5 684,114 - AO356_03055 0.70 +0.8 684,131 + AO356_03055 0.70 +0.4 684,131 + AO356_03055 0.70 +0.2 684,132 - AO356_03055 0.70 -0.0 684,132 - AO356_03055 0.70 -0.2 684,157 + AO356_03055 0.71 +0.2 684,526 + AO356_03055 0.84 +0.0 684,526 + AO356_03055 0.84 +0.0 684,526 + AO356_03055 0.84 -0.2 684,526 + AO356_03055 0.84 -0.8 684,527 - AO356_03055 0.84 -0.8 684,544 + AO356_03055 0.84 +1.3 684,544 + AO356_03055 0.84 -0.2 684,545 - AO356_03055 0.84 +1.0 684,545 - AO356_03055 0.84 -0.5 684,589 + AO356_03055 0.86 -0.1 684,589 + AO356_03055 0.86 +0.2 684,589 + AO356_03055 0.86 +0.1 684,590 - AO356_03055 0.86 +0.0 684,590 - AO356_03055 0.86 +0.0 684,590 - AO356_03055 0.86 -0.2 684,590 - AO356_03055 0.86 +0.5 684,590 - AO356_03055 0.86 -0.4 684,590 - AO356_03055 0.86 +0.2 684,590 - AO356_03055 0.86 +1.2 684,808 + +1.2 684,808 + +0.3 684,808 + +0.8 684,808 + -0.1 684,809 - -0.7 684,916 + +0.3 684,916 + +0.8 684,916 + +0.2 685,034 - -0.2 685,075 - AO356_03060 0.14 +0.3 685,329 - AO356_03060 0.66 +0.8 685,329 - AO356_03060 0.66 +0.2 685,329 - AO356_03060 0.66 -0.1 685,540 + +0.5 685,697 - AO356_03065 0.23 -0.2 685,843 + AO356_03065 0.40 +0.4 685,843 + AO356_03065 0.40 +0.0 685,843 + AO356_03065 0.40 +0.2 685,843 + AO356_03065 0.40 +0.4 685,844 - AO356_03065 0.40 +0.8 685,844 - AO356_03065 0.40 +1.2 685,844 - AO356_03065 0.40 +1.3 685,844 - AO356_03065 0.40 -0.0 686,236 + AO356_03065 0.84 -0.1 686,404 + -0.5 686,404 + -0.7 686,405 - -0.2 686,405 - +0.3 686,405 - -0.7 686,405 - -0.1 686,405 - -0.7 686,405 - -1.4 686,405 - -0.1 686,450 + -0.1 686,450 + +0.2 686,451 - -0.7 686,462 + +0.5 686,462 + +1.2 686,462 + -0.8 686,462 + -1.2 686,462 + +0.1 686,462 + +0.5 686,462 + +0.2 686,462 + -0.2 686,462 + +0.0 686,463 - +1.3 686,463 - -0.8 686,463 - -1.2 686,463 - +0.1 686,463 - -0.1
Or see this region's nucleotide sequence