Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02910

Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02900 and AO356_02905 are separated by 70 nucleotidesAO356_02905 and AO356_02910 are separated by 115 nucleotidesAO356_02910 and AO356_02915 are separated by 180 nucleotides AO356_02900: AO356_02900 - acetyltransferase, at 649,869 to 650,882 _02900 AO356_02905: AO356_02905 - amino acid ABC transporter substrate-binding protein, at 650,953 to 651,729 _02905 AO356_02910: AO356_02910 - TetR family transcriptional regulator, at 651,845 to 652,471 _02910 AO356_02915: AO356_02915 - terpene utilization protein AtuA, at 652,652 to 654,442 _02915 Position (kb) 651 652 653Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 650.898 kb on - strandat 650.907 kb on + strandat 650.943 kb on - strandat 650.988 kb on - strandat 651.098 kb on + strand, within AO356_02905at 651.099 kb on - strand, within AO356_02905at 651.161 kb on + strand, within AO356_02905at 651.161 kb on + strand, within AO356_02905at 651.161 kb on + strand, within AO356_02905at 651.162 kb on - strand, within AO356_02905at 651.174 kb on - strand, within AO356_02905at 651.242 kb on + strand, within AO356_02905at 651.242 kb on + strand, within AO356_02905at 651.242 kb on + strand, within AO356_02905at 651.243 kb on - strand, within AO356_02905at 651.243 kb on - strand, within AO356_02905at 651.243 kb on - strand, within AO356_02905at 651.260 kb on + strand, within AO356_02905at 651.260 kb on + strand, within AO356_02905at 651.261 kb on - strand, within AO356_02905at 651.261 kb on - strand, within AO356_02905at 651.261 kb on - strand, within AO356_02905at 651.309 kb on - strand, within AO356_02905at 651.309 kb on - strand, within AO356_02905at 651.548 kb on + strand, within AO356_02905at 651.549 kb on - strand, within AO356_02905at 651.630 kb on - strand, within AO356_02905at 651.630 kb on - strand, within AO356_02905at 651.630 kb on - strand, within AO356_02905at 651.630 kb on - strand, within AO356_02905at 651.753 kb on + strandat 651.753 kb on + strandat 651.754 kb on - strandat 651.754 kb on - strandat 651.781 kb on + strandat 651.781 kb on + strandat 651.781 kb on + strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.782 kb on - strandat 651.792 kb on + strandat 651.793 kb on - strandat 651.793 kb on - strandat 651.811 kb on - strandat 651.830 kb on + strandat 651.830 kb on + strandat 651.831 kb on - strandat 651.847 kb on - strandat 651.928 kb on + strand, within AO356_02910at 651.988 kb on + strand, within AO356_02910at 651.989 kb on - strand, within AO356_02910at 651.989 kb on - strand, within AO356_02910at 651.991 kb on - strand, within AO356_02910at 651.991 kb on - strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.038 kb on + strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.039 kb on - strand, within AO356_02910at 652.042 kb on + strand, within AO356_02910at 652.042 kb on + strand, within AO356_02910at 652.042 kb on + strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.043 kb on - strand, within AO356_02910at 652.098 kb on + strand, within AO356_02910at 652.099 kb on - strand, within AO356_02910at 652.107 kb on - strand, within AO356_02910at 652.483 kb on + strandat 652.484 kb on - strandat 652.544 kb on - strandat 652.619 kb on + strandat 652.746 kb on - strandat 652.746 kb on - strandat 652.746 kb on - strandat 652.760 kb on + strandat 652.761 kb on - strandat 652.966 kb on - strand, within AO356_02915at 653.093 kb on + strand, within AO356_02915at 653.223 kb on - strand, within AO356_02915at 653.223 kb on - strand, within AO356_02915at 653.296 kb on + strand, within AO356_02915at 653.321 kb on + strand, within AO356_02915at 653.439 kb on - strand, within AO356_02915at 653.463 kb on - strand, within AO356_02915

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Per-strain Table

Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
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650,898 - +0.8
650,907 + -0.9
650,943 - +1.0
650,988 - -0.8
651,098 + AO356_02905 0.19 +0.4
651,099 - AO356_02905 0.19 +0.9
651,161 + AO356_02905 0.27 +1.0
651,161 + AO356_02905 0.27 +0.3
651,161 + AO356_02905 0.27 +0.9
651,162 - AO356_02905 0.27 +0.3
651,174 - AO356_02905 0.28 +1.1
651,242 + AO356_02905 0.37 -1.2
651,242 + AO356_02905 0.37 -0.6
651,242 + AO356_02905 0.37 -0.3
651,243 - AO356_02905 0.37 +1.3
651,243 - AO356_02905 0.37 -0.0
651,243 - AO356_02905 0.37 -0.4
651,260 + AO356_02905 0.40 +0.7
651,260 + AO356_02905 0.40 +0.3
651,261 - AO356_02905 0.40 +0.8
651,261 - AO356_02905 0.40 +0.3
651,261 - AO356_02905 0.40 +1.0
651,309 - AO356_02905 0.46 +0.9
651,309 - AO356_02905 0.46 -0.5
651,548 + AO356_02905 0.77 +0.1
651,549 - AO356_02905 0.77 -1.1
651,630 - AO356_02905 0.87 +0.9
651,630 - AO356_02905 0.87 +0.5
651,630 - AO356_02905 0.87 +0.8
651,630 - AO356_02905 0.87 +1.8
651,753 + -0.0
651,753 + -0.2
651,754 - +1.4
651,754 - +0.7
651,781 + +2.4
651,781 + -0.2
651,781 + +0.4
651,782 - -0.1
651,782 - -1.9
651,782 - +1.0
651,782 - -3.0
651,782 - -0.7
651,792 + +0.8
651,793 - -0.2
651,793 - -2.2
651,811 - -0.2
651,830 + -1.0
651,830 + +0.7
651,831 - -1.2
651,847 - -1.3
651,928 + AO356_02910 0.13 +0.4
651,988 + AO356_02910 0.23 -0.9
651,989 - AO356_02910 0.23 +0.1
651,989 - AO356_02910 0.23 -2.2
651,991 - AO356_02910 0.23 -0.9
651,991 - AO356_02910 0.23 -0.2
652,038 + AO356_02910 0.31 +0.7
652,038 + AO356_02910 0.31 -0.9
652,038 + AO356_02910 0.31 -0.1
652,038 + AO356_02910 0.31 +0.4
652,038 + AO356_02910 0.31 +2.0
652,038 + AO356_02910 0.31 +0.4
652,038 + AO356_02910 0.31 -0.6
652,038 + AO356_02910 0.31 -1.8
652,038 + AO356_02910 0.31 +0.5
652,038 + AO356_02910 0.31 -1.1
652,038 + AO356_02910 0.31 -2.2
652,039 - AO356_02910 0.31 -2.0
652,039 - AO356_02910 0.31 -0.8
652,039 - AO356_02910 0.31 -1.6
652,039 - AO356_02910 0.31 -2.2
652,039 - AO356_02910 0.31 -0.8
652,039 - AO356_02910 0.31 -0.2
652,039 - AO356_02910 0.31 +0.0
652,039 - AO356_02910 0.31 -1.5
652,039 - AO356_02910 0.31 +0.3
652,039 - AO356_02910 0.31 +0.1
652,039 - AO356_02910 0.31 -0.8
652,039 - AO356_02910 0.31 -1.5
652,039 - AO356_02910 0.31 -1.2
652,039 - AO356_02910 0.31 -1.6
652,042 + AO356_02910 0.31 +0.4
652,042 + AO356_02910 0.31 +0.0
652,042 + AO356_02910 0.31 +0.8
652,043 - AO356_02910 0.32 -1.4
652,043 - AO356_02910 0.32 -1.7
652,043 - AO356_02910 0.32 -1.0
652,043 - AO356_02910 0.32 -1.7
652,043 - AO356_02910 0.32 -0.8
652,098 + AO356_02910 0.40 -0.9
652,099 - AO356_02910 0.41 -0.4
652,107 - AO356_02910 0.42 -1.9
652,483 + +0.3
652,484 - -0.9
652,544 - +0.3
652,619 + +0.2
652,746 - -0.3
652,746 - -0.8
652,746 - -1.6
652,760 + -0.0
652,761 - -0.6
652,966 - AO356_02915 0.18 -0.6
653,093 + AO356_02915 0.25 +1.2
653,223 - AO356_02915 0.32 -1.0
653,223 - AO356_02915 0.32 +0.7
653,296 + AO356_02915 0.36 -0.4
653,321 + AO356_02915 0.37 -0.5
653,439 - AO356_02915 0.44 -0.4
653,463 - AO356_02915 0.45 +0.4

Or see this region's nucleotide sequence