Experiment: 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01810 and AO356_01815 are separated by 281 nucleotides AO356_01815 and AO356_01820 are separated by 200 nucleotides AO356_01820 and AO356_01825 are separated by 129 nucleotides
AO356_01810: AO356_01810 - MFS transporter, at 404,596 to 405,756
_01810
AO356_01815: AO356_01815 - serine/threonine protein kinase, at 406,038 to 407,270
_01815
AO356_01820: AO356_01820 - hypothetical protein, at 407,471 to 407,980
_01820
AO356_01825: AO356_01825 - hypothetical protein, at 408,110 to 408,757
_01825
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2 at 405.092 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.099 kb on - strand, within AO356_01810 at 405.227 kb on + strand, within AO356_01810 at 405.228 kb on - strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.232 kb on - strand, within AO356_01810 at 405.232 kb on - strand, within AO356_01810 at 405.610 kb on - strand, within AO356_01810 at 405.610 kb on - strand, within AO356_01810 at 405.610 kb on - strand, within AO356_01810 at 405.718 kb on - strand at 405.834 kb on + strand at 405.834 kb on + strand at 405.835 kb on - strand at 405.835 kb on - strand at 405.853 kb on + strand at 405.853 kb on + strand at 405.854 kb on - strand at 405.877 kb on + strand at 405.926 kb on + strand at 405.952 kb on - strand at 406.019 kb on + strand at 406.020 kb on - strand at 406.020 kb on - strand at 406.296 kb on + strand, within AO356_01815 at 406.297 kb on - strand, within AO356_01815 at 406.343 kb on + strand, within AO356_01815 at 406.343 kb on + strand, within AO356_01815 at 406.344 kb on - strand, within AO356_01815 at 406.344 kb on - strand, within AO356_01815 at 406.344 kb on - strand, within AO356_01815 at 406.547 kb on + strand, within AO356_01815 at 406.696 kb on + strand, within AO356_01815 at 406.696 kb on + strand, within AO356_01815 at 406.696 kb on + strand, within AO356_01815 at 406.696 kb on + strand, within AO356_01815 at 406.697 kb on - strand, within AO356_01815 at 406.844 kb on + strand, within AO356_01815 at 406.896 kb on + strand, within AO356_01815 at 406.896 kb on + strand, within AO356_01815 at 406.896 kb on + strand, within AO356_01815 at 406.896 kb on + strand, within AO356_01815 at 406.896 kb on + strand, within AO356_01815 at 406.897 kb on - strand, within AO356_01815 at 406.897 kb on - strand, within AO356_01815 at 406.897 kb on - strand, within AO356_01815 at 406.897 kb on - strand, within AO356_01815 at 406.897 kb on - strand, within AO356_01815 at 406.897 kb on - strand, within AO356_01815 at 406.960 kb on + strand, within AO356_01815 at 406.961 kb on - strand, within AO356_01815 at 406.978 kb on + strand, within AO356_01815 at 406.978 kb on + strand, within AO356_01815 at 406.978 kb on + strand, within AO356_01815 at 406.979 kb on - strand, within AO356_01815 at 407.404 kb on + strand at 407.404 kb on + strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.473 kb on - strand at 407.473 kb on - strand at 407.487 kb on + strand at 407.487 kb on + strand at 407.488 kb on - strand at 407.488 kb on - strand at 407.488 kb on - strand at 407.488 kb on - strand at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.571 kb on + strand, within AO356_01820 at 407.583 kb on + strand, within AO356_01820 at 407.583 kb on + strand, within AO356_01820 at 407.584 kb on - strand, within AO356_01820 at 407.584 kb on - strand, within AO356_01820 at 407.584 kb on - strand, within AO356_01820 at 407.694 kb on - strand, within AO356_01820 at 407.694 kb on - strand, within AO356_01820 at 407.694 kb on - strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.964 kb on + strand at 407.974 kb on + strand at 407.974 kb on + strand at 407.974 kb on + strand at 407.974 kb on + strand at 407.975 kb on - strand at 407.975 kb on - strand at 408.028 kb on + strand at 408.030 kb on + strand at 408.030 kb on + strand at 408.030 kb on + strand at 408.031 kb on - strand at 408.060 kb on + strand at 408.074 kb on + strand at 408.075 kb on - strand at 408.075 kb on - strand at 408.154 kb on + strand at 408.154 kb on + strand at 408.215 kb on + strand, within AO356_01825 at 408.216 kb on - strand, within AO356_01825
Per-strain Table
Position Strand Gene LocusTag Fraction 50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine remove 405,092 + AO356_01810 0.43 -1.6 405,092 + AO356_01810 0.43 +0.1 405,092 + AO356_01810 0.43 -0.5 405,093 - AO356_01810 0.43 +0.3 405,093 - AO356_01810 0.43 -1.1 405,093 - AO356_01810 0.43 -0.7 405,093 - AO356_01810 0.43 -0.9 405,093 - AO356_01810 0.43 +0.5 405,093 - AO356_01810 0.43 +0.9 405,098 + AO356_01810 0.43 +0.2 405,098 + AO356_01810 0.43 +0.5 405,098 + AO356_01810 0.43 +0.6 405,099 - AO356_01810 0.43 +0.1 405,227 + AO356_01810 0.54 -0.4 405,228 - AO356_01810 0.54 -0.0 405,231 + AO356_01810 0.55 -1.1 405,231 + AO356_01810 0.55 +0.3 405,231 + AO356_01810 0.55 +2.0 405,232 - AO356_01810 0.55 -0.4 405,232 - AO356_01810 0.55 +0.4 405,610 - AO356_01810 0.87 +0.1 405,610 - AO356_01810 0.87 -0.1 405,610 - AO356_01810 0.87 -0.0 405,718 - +2.5 405,834 + -0.6 405,834 + +1.7 405,835 - -0.1 405,835 - +0.0 405,853 + +1.7 405,853 + +0.6 405,854 - +0.3 405,877 + +0.7 405,926 + -0.2 405,952 - -0.1 406,019 + +1.0 406,020 - -0.5 406,020 - +0.1 406,296 + AO356_01815 0.21 -0.3 406,297 - AO356_01815 0.21 +0.9 406,343 + AO356_01815 0.25 -0.2 406,343 + AO356_01815 0.25 +0.1 406,344 - AO356_01815 0.25 +0.2 406,344 - AO356_01815 0.25 -0.1 406,344 - AO356_01815 0.25 +0.9 406,547 + AO356_01815 0.41 +0.6 406,696 + AO356_01815 0.53 +0.1 406,696 + AO356_01815 0.53 +0.7 406,696 + AO356_01815 0.53 -0.3 406,696 + AO356_01815 0.53 +0.1 406,697 - AO356_01815 0.53 +0.7 406,844 + AO356_01815 0.65 -0.9 406,896 + AO356_01815 0.70 +1.0 406,896 + AO356_01815 0.70 +0.6 406,896 + AO356_01815 0.70 -1.1 406,896 + AO356_01815 0.70 -0.5 406,896 + AO356_01815 0.70 +1.1 406,897 - AO356_01815 0.70 +0.1 406,897 - AO356_01815 0.70 -0.6 406,897 - AO356_01815 0.70 +0.1 406,897 - AO356_01815 0.70 +0.2 406,897 - AO356_01815 0.70 +1.3 406,897 - AO356_01815 0.70 -0.5 406,960 + AO356_01815 0.75 +1.0 406,961 - AO356_01815 0.75 +0.1 406,978 + AO356_01815 0.76 -0.4 406,978 + AO356_01815 0.76 -0.3 406,978 + AO356_01815 0.76 -0.2 406,979 - AO356_01815 0.76 -0.3 407,404 + +0.6 407,404 + +0.5 407,405 - +1.2 407,405 - -1.7 407,405 - +0.7 407,405 - -0.9 407,405 - +0.0 407,405 - +1.3 407,405 - +0.7 407,473 - +0.1 407,473 - -0.3 407,487 + +0.6 407,487 + -0.8 407,488 - +0.3 407,488 - +0.2 407,488 - -1.6 407,488 - +0.9 407,532 + AO356_01820 0.12 +0.4 407,532 + AO356_01820 0.12 +0.2 407,532 + AO356_01820 0.12 +0.0 407,532 + AO356_01820 0.12 +1.0 407,532 + AO356_01820 0.12 +1.3 407,532 + AO356_01820 0.12 +1.3 407,533 - AO356_01820 0.12 +0.9 407,533 - AO356_01820 0.12 +0.7 407,533 - AO356_01820 0.12 -1.5 407,533 - AO356_01820 0.12 +0.0 407,533 - AO356_01820 0.12 -0.1 407,533 - AO356_01820 0.12 +0.6 407,533 - AO356_01820 0.12 -0.3 407,533 - AO356_01820 0.12 -0.3 407,533 - AO356_01820 0.12 -1.5 407,533 - AO356_01820 0.12 -0.8 407,533 - AO356_01820 0.12 -1.0 407,533 - AO356_01820 0.12 +0.5 407,533 - AO356_01820 0.12 -0.2 407,571 + AO356_01820 0.20 +0.1 407,583 + AO356_01820 0.22 +0.7 407,583 + AO356_01820 0.22 +0.5 407,584 - AO356_01820 0.22 +0.2 407,584 - AO356_01820 0.22 -0.5 407,584 - AO356_01820 0.22 +0.3 407,694 - AO356_01820 0.44 +0.5 407,694 - AO356_01820 0.44 -0.3 407,694 - AO356_01820 0.44 +0.1 407,745 + AO356_01820 0.54 -0.6 407,745 + AO356_01820 0.54 +0.4 407,745 + AO356_01820 0.54 -0.3 407,745 + AO356_01820 0.54 -1.3 407,745 + AO356_01820 0.54 -0.4 407,746 - AO356_01820 0.54 -0.3 407,746 - AO356_01820 0.54 +0.1 407,746 - AO356_01820 0.54 +0.0 407,746 - AO356_01820 0.54 +0.7 407,746 - AO356_01820 0.54 -1.9 407,964 + -0.3 407,974 + -0.5 407,974 + -1.6 407,974 + +0.6 407,974 + +0.1 407,975 - +0.2 407,975 - +0.3 408,028 + +1.4 408,030 + +0.7 408,030 + +0.8 408,030 + +0.1 408,031 - -0.3 408,060 + -0.5 408,074 + +0.9 408,075 - -0.1 408,075 - +1.0 408,154 + +0.7 408,154 + -0.4 408,215 + AO356_01825 0.16 -0.6 408,216 - AO356_01825 0.16 -0.3
Or see this region's nucleotide sequence