Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08830

Experiment: m.b. Tetracycline 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08820 and PGA1_c08830 are separated by 254 nucleotidesPGA1_c08830 and PGA1_c08840 are separated by 33 nucleotidesPGA1_c08840 and PGA1_c08850 are separated by 40 nucleotides PGA1_c08820: PGA1_c08820 - putative oxidoreductase, at 912,215 to 912,889 _c08820 PGA1_c08830: PGA1_c08830 - hypothetical protein, at 913,144 to 913,554 _c08830 PGA1_c08840: PGA1_c08840 - hypothetical protein, at 913,588 to 914,079 _c08840 PGA1_c08850: PGA1_c08850 - secondary thiamine-phosphate synthase enzyme, at 914,120 to 914,536 _c08850 Position (kb) 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 912.168 kb on - strandat 912.172 kb on + strandat 912.218 kb on + strandat 912.389 kb on - strand, within PGA1_c08820at 912.496 kb on - strand, within PGA1_c08820at 912.505 kb on - strand, within PGA1_c08820at 912.528 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.543 kb on + strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.551 kb on - strand, within PGA1_c08820at 912.620 kb on + strand, within PGA1_c08820at 912.628 kb on - strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.730 kb on + strand, within PGA1_c08820at 912.738 kb on - strand, within PGA1_c08820at 912.757 kb on + strand, within PGA1_c08820at 912.823 kb on - strandat 912.823 kb on - strandat 912.849 kb on - strandat 912.940 kb on - strandat 912.963 kb on + strandat 912.968 kb on + strandat 912.987 kb on + strandat 913.046 kb on + strandat 913.046 kb on - strandat 913.066 kb on - strandat 913.088 kb on + strandat 913.090 kb on + strandat 913.110 kb on - strandat 913.138 kb on + strandat 913.146 kb on - strandat 913.160 kb on - strandat 913.191 kb on - strand, within PGA1_c08830at 913.191 kb on - strand, within PGA1_c08830at 913.191 kb on - strand, within PGA1_c08830at 913.193 kb on + strand, within PGA1_c08830at 913.251 kb on + strand, within PGA1_c08830at 913.383 kb on + strand, within PGA1_c08830at 913.383 kb on + strand, within PGA1_c08830at 913.391 kb on + strand, within PGA1_c08830at 913.391 kb on - strand, within PGA1_c08830at 913.392 kb on - strand, within PGA1_c08830at 913.427 kb on + strand, within PGA1_c08830at 913.471 kb on - strand, within PGA1_c08830at 913.500 kb on + strand, within PGA1_c08830at 913.513 kb on - strand, within PGA1_c08830at 913.545 kb on - strandat 913.627 kb on + strandat 913.627 kb on + strandat 913.635 kb on - strandat 913.650 kb on - strand, within PGA1_c08840at 913.707 kb on + strand, within PGA1_c08840at 913.715 kb on - strand, within PGA1_c08840at 913.725 kb on - strand, within PGA1_c08840at 913.780 kb on - strand, within PGA1_c08840at 913.855 kb on - strand, within PGA1_c08840at 913.865 kb on - strand, within PGA1_c08840at 913.880 kb on - strand, within PGA1_c08840at 913.880 kb on - strand, within PGA1_c08840at 913.937 kb on + strand, within PGA1_c08840at 913.987 kb on + strand, within PGA1_c08840at 914.016 kb on - strand, within PGA1_c08840at 914.075 kb on + strandat 914.081 kb on - strandat 914.096 kb on - strandat 914.109 kb on + strandat 914.109 kb on + strandat 914.117 kb on - strandat 914.117 kb on - strandat 914.140 kb on + strandat 914.151 kb on + strandat 914.153 kb on - strandat 914.159 kb on - strandat 914.200 kb on - strand, within PGA1_c08850at 914.204 kb on + strand, within PGA1_c08850at 914.209 kb on + strand, within PGA1_c08850at 914.211 kb on + strand, within PGA1_c08850at 914.211 kb on + strand, within PGA1_c08850at 914.219 kb on - strand, within PGA1_c08850at 914.219 kb on - strand, within PGA1_c08850at 914.244 kb on + strand, within PGA1_c08850at 914.395 kb on + strand, within PGA1_c08850at 914.403 kb on - strand, within PGA1_c08850at 914.453 kb on + strand, within PGA1_c08850at 914.461 kb on - strand, within PGA1_c08850at 914.474 kb on - strand, within PGA1_c08850at 914.481 kb on - strand, within PGA1_c08850at 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.508 kb on + strandat 914.516 kb on - strandat 914.516 kb on - strandat 914.516 kb on - strandat 914.516 kb on - strandat 914.516 kb on - strandat 914.516 kb on - strandat 914.516 kb on - strandat 914.530 kb on + strandat 914.538 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.00625 mg/ml
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912,168 - -0.4
912,172 + -0.4
912,218 + -1.4
912,389 - PGA1_c08820 0.26 +0.1
912,496 - PGA1_c08820 0.42 +0.4
912,505 - PGA1_c08820 0.43 +0.3
912,528 + PGA1_c08820 0.46 +0.3
912,543 + PGA1_c08820 0.49 +1.5
912,543 + PGA1_c08820 0.49 -1.2
912,543 + PGA1_c08820 0.49 -0.4
912,543 + PGA1_c08820 0.49 +2.1
912,551 - PGA1_c08820 0.50 -0.5
912,551 - PGA1_c08820 0.50 +1.4
912,551 - PGA1_c08820 0.50 +1.1
912,620 + PGA1_c08820 0.60 +0.1
912,628 - PGA1_c08820 0.61 +0.9
912,730 + PGA1_c08820 0.76 +1.7
912,730 + PGA1_c08820 0.76 -0.2
912,730 + PGA1_c08820 0.76 +0.2
912,738 - PGA1_c08820 0.77 -0.4
912,757 + PGA1_c08820 0.80 +0.0
912,823 - +0.3
912,823 - -1.1
912,849 - +0.8
912,940 - +0.7
912,963 + +0.3
912,968 + +0.4
912,987 + -0.2
913,046 + +0.1
913,046 - -0.4
913,066 - +1.1
913,088 + -0.5
913,090 + -0.0
913,110 - +1.2
913,138 + +0.2
913,146 - -1.1
913,160 - -0.3
913,191 - PGA1_c08830 0.11 +0.8
913,191 - PGA1_c08830 0.11 -0.2
913,191 - PGA1_c08830 0.11 -0.3
913,193 + PGA1_c08830 0.12 -0.6
913,251 + PGA1_c08830 0.26 +2.0
913,383 + PGA1_c08830 0.58 -2.1
913,383 + PGA1_c08830 0.58 -2.5
913,391 + PGA1_c08830 0.60 -0.5
913,391 - PGA1_c08830 0.60 +0.1
913,392 - PGA1_c08830 0.60 +0.4
913,427 + PGA1_c08830 0.69 +0.2
913,471 - PGA1_c08830 0.80 +0.3
913,500 + PGA1_c08830 0.87 -1.0
913,513 - PGA1_c08830 0.90 -0.5
913,545 - +1.8
913,627 + +0.3
913,627 + +1.0
913,635 - +0.2
913,650 - PGA1_c08840 0.13 -0.9
913,707 + PGA1_c08840 0.24 -1.1
913,715 - PGA1_c08840 0.26 +1.1
913,725 - PGA1_c08840 0.28 -1.1
913,780 - PGA1_c08840 0.39 -0.5
913,855 - PGA1_c08840 0.54 -1.2
913,865 - PGA1_c08840 0.56 +0.7
913,880 - PGA1_c08840 0.59 +0.2
913,880 - PGA1_c08840 0.59 +0.4
913,937 + PGA1_c08840 0.71 +0.2
913,987 + PGA1_c08840 0.81 -1.5
914,016 - PGA1_c08840 0.87 +0.5
914,075 + -0.1
914,081 - +1.3
914,096 - -0.1
914,109 + +1.4
914,109 + -1.4
914,117 - -0.1
914,117 - -0.2
914,140 + +0.4
914,151 + -0.2
914,153 - +0.7
914,159 - +0.4
914,200 - PGA1_c08850 0.19 +0.0
914,204 + PGA1_c08850 0.20 -0.1
914,209 + PGA1_c08850 0.21 -0.5
914,211 + PGA1_c08850 0.22 +0.4
914,211 + PGA1_c08850 0.22 +1.7
914,219 - PGA1_c08850 0.24 -0.1
914,219 - PGA1_c08850 0.24 -1.1
914,244 + PGA1_c08850 0.30 -0.2
914,395 + PGA1_c08850 0.66 -0.4
914,403 - PGA1_c08850 0.68 +0.2
914,453 + PGA1_c08850 0.80 -0.8
914,461 - PGA1_c08850 0.82 +0.8
914,474 - PGA1_c08850 0.85 -0.1
914,481 - PGA1_c08850 0.87 -1.1
914,508 + +0.4
914,508 + -0.6
914,508 + +0.5
914,508 + +0.2
914,508 + -0.1
914,508 + -1.0
914,508 + -0.8
914,508 + +0.9
914,508 + -0.3
914,508 + -2.0
914,508 + -0.7
914,508 + -1.3
914,508 + -1.3
914,508 + +0.4
914,508 + +0.3
914,508 + +0.6
914,508 + +0.5
914,516 - -0.6
914,516 - -0.3
914,516 - +1.7
914,516 - +0.5
914,516 - -0.5
914,516 - +0.3
914,516 - +1.1
914,530 + -0.2
914,538 - +0.9

Or see this region's nucleotide sequence