Experiment: m.b. Tetracycline 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08700 and PGA1_c08710 are separated by 3 nucleotides PGA1_c08710 and PGA1_c08720 overlap by 4 nucleotides PGA1_c08720 and PGA1_c08730 are separated by 74 nucleotides PGA1_c08730 and PGA1_c08740 are separated by 113 nucleotides
PGA1_c08700: PGA1_c08700 - hypothetical protein, at 896,851 to 897,450
_c08700
PGA1_c08710: PGA1_c08710 - TadE-like protein., at 897,454 to 898,014
_c08710
PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693
_c08720
PGA1_c08730: PGA1_c08730 - hypothetical protein, at 899,768 to 899,938
_c08730
PGA1_c08740: PGA1_c08740 - glutamate dehydrogenase GluD, at 900,052 to 901,482
_c08740
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 897.064 kb on - strand, within PGA1_c08700 at 897.066 kb on + strand, within PGA1_c08700 at 897.094 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.111 kb on + strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.119 kb on - strand, within PGA1_c08700 at 897.128 kb on - strand, within PGA1_c08700 at 897.152 kb on - strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.246 kb on + strand, within PGA1_c08700 at 897.270 kb on + strand, within PGA1_c08700 at 897.278 kb on - strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.280 kb on + strand, within PGA1_c08700 at 897.394 kb on - strand at 897.419 kb on + strand at 897.427 kb on - strand at 897.475 kb on + strand at 897.631 kb on - strand, within PGA1_c08710 at 897.640 kb on - strand, within PGA1_c08710 at 897.641 kb on - strand, within PGA1_c08710 at 897.660 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.694 kb on - strand, within PGA1_c08710 at 897.733 kb on + strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.741 kb on - strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.818 kb on + strand, within PGA1_c08710 at 897.868 kb on - strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.870 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on + strand, within PGA1_c08710 at 897.878 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.886 kb on - strand, within PGA1_c08710 at 897.901 kb on + strand, within PGA1_c08710 at 897.950 kb on - strand, within PGA1_c08710 at 897.968 kb on - strand at 898.070 kb on + strand at 898.078 kb on - strand at 898.078 kb on - strand at 898.119 kb on - strand at 898.127 kb on - strand at 898.149 kb on + strand at 898.161 kb on + strand at 898.192 kb on + strand, within PGA1_c08720 at 898.220 kb on + strand, within PGA1_c08720 at 898.259 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.297 kb on + strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.305 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.361 kb on - strand, within PGA1_c08720 at 898.388 kb on + strand, within PGA1_c08720 at 898.429 kb on - strand, within PGA1_c08720 at 898.431 kb on + strand, within PGA1_c08720 at 898.438 kb on + strand, within PGA1_c08720 at 898.451 kb on + strand, within PGA1_c08720 at 898.451 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.456 kb on - strand, within PGA1_c08720 at 898.547 kb on - strand, within PGA1_c08720 at 898.550 kb on - strand, within PGA1_c08720 at 898.579 kb on - strand, within PGA1_c08720 at 898.622 kb on + strand, within PGA1_c08720 at 898.635 kb on - strand, within PGA1_c08720 at 898.655 kb on + strand, within PGA1_c08720 at 898.730 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.735 kb on + strand, within PGA1_c08720 at 898.778 kb on + strand, within PGA1_c08720 at 898.793 kb on + strand, within PGA1_c08720 at 898.900 kb on - strand, within PGA1_c08720 at 898.952 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on + strand, within PGA1_c08720 at 898.960 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.968 kb on - strand, within PGA1_c08720 at 898.970 kb on + strand, within PGA1_c08720 at 899.018 kb on - strand, within PGA1_c08720 at 899.018 kb on - strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.035 kb on + strand, within PGA1_c08720 at 899.040 kb on + strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.043 kb on - strand, within PGA1_c08720 at 899.048 kb on - strand, within PGA1_c08720 at 899.067 kb on + strand, within PGA1_c08720 at 899.072 kb on + strand, within PGA1_c08720 at 899.073 kb on - strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.080 kb on - strand, within PGA1_c08720 at 899.083 kb on - strand, within PGA1_c08720 at 899.109 kb on + strand, within PGA1_c08720 at 899.158 kb on + strand, within PGA1_c08720 at 899.265 kb on - strand, within PGA1_c08720 at 899.274 kb on + strand, within PGA1_c08720 at 899.276 kb on + strand, within PGA1_c08720 at 899.277 kb on - strand, within PGA1_c08720 at 899.321 kb on + strand, within PGA1_c08720 at 899.399 kb on + strand, within PGA1_c08720 at 899.409 kb on + strand, within PGA1_c08720 at 899.417 kb on - strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.471 kb on + strand, within PGA1_c08720 at 899.480 kb on - strand, within PGA1_c08720 at 899.484 kb on - strand, within PGA1_c08720 at 899.502 kb on - strand, within PGA1_c08720 at 899.504 kb on + strand, within PGA1_c08720 at 899.514 kb on + strand, within PGA1_c08720 at 899.522 kb on - strand, within PGA1_c08720 at 899.548 kb on + strand at 899.555 kb on + strand at 899.580 kb on - strand at 899.580 kb on - strand at 899.585 kb on + strand at 899.626 kb on + strand at 899.644 kb on + strand at 899.647 kb on - strand at 899.649 kb on + strand at 899.649 kb on + strand at 899.657 kb on - strand at 899.657 kb on - strand at 899.689 kb on + strand at 899.711 kb on + strand at 899.717 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.724 kb on + strand at 899.725 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.732 kb on - strand at 899.755 kb on + strand at 899.756 kb on + strand at 899.756 kb on + strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.795 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.852 kb on + strand, within PGA1_c08730 at 899.853 kb on + strand, within PGA1_c08730 at 899.857 kb on + strand, within PGA1_c08730 at 899.860 kb on - strand, within PGA1_c08730 at 899.862 kb on - strand, within PGA1_c08730 at 899.890 kb on + strand, within PGA1_c08730 at 899.906 kb on + strand, within PGA1_c08730 at 899.923 kb on + strand at 900.003 kb on - strand at 900.012 kb on + strand at 900.049 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.00625 mg/ml remove 897,064 - PGA1_c08700 0.35 -0.8 897,066 + PGA1_c08700 0.36 -0.8 897,094 + PGA1_c08700 0.41 -0.3 897,111 + PGA1_c08700 0.43 -0.6 897,111 + PGA1_c08700 0.43 -0.0 897,111 + PGA1_c08700 0.43 -0.1 897,111 + PGA1_c08700 0.43 -0.3 897,111 + PGA1_c08700 0.43 -0.7 897,119 - PGA1_c08700 0.45 +0.4 897,119 - PGA1_c08700 0.45 -0.6 897,119 - PGA1_c08700 0.45 +1.0 897,119 - PGA1_c08700 0.45 +0.9 897,119 - PGA1_c08700 0.45 -0.6 897,119 - PGA1_c08700 0.45 +1.1 897,119 - PGA1_c08700 0.45 +0.2 897,128 - PGA1_c08700 0.46 +0.6 897,152 - PGA1_c08700 0.50 -0.9 897,246 + PGA1_c08700 0.66 +1.5 897,246 + PGA1_c08700 0.66 -0.7 897,270 + PGA1_c08700 0.70 +0.5 897,278 - PGA1_c08700 0.71 -2.6 897,280 + PGA1_c08700 0.71 +1.2 897,280 + PGA1_c08700 0.71 -0.5 897,394 - +0.1 897,419 + -0.9 897,427 - +1.0 897,475 + +0.3 897,631 - PGA1_c08710 0.32 -0.3 897,640 - PGA1_c08710 0.33 -0.8 897,641 - PGA1_c08710 0.33 -0.8 897,660 - PGA1_c08710 0.37 +0.5 897,694 - PGA1_c08710 0.43 +0.3 897,694 - PGA1_c08710 0.43 -0.7 897,733 + PGA1_c08710 0.50 +0.3 897,741 - PGA1_c08710 0.51 +0.2 897,741 - PGA1_c08710 0.51 +0.2 897,818 + PGA1_c08710 0.65 +0.1 897,818 + PGA1_c08710 0.65 +3.5 897,818 + PGA1_c08710 0.65 -0.7 897,868 - PGA1_c08710 0.74 -1.0 897,870 + PGA1_c08710 0.74 -0.8 897,870 + PGA1_c08710 0.74 -1.8 897,878 + PGA1_c08710 0.76 -2.3 897,878 + PGA1_c08710 0.76 -0.6 897,878 - PGA1_c08710 0.76 +0.9 897,886 - PGA1_c08710 0.77 -1.2 897,886 - PGA1_c08710 0.77 -0.6 897,901 + PGA1_c08710 0.80 -0.4 897,950 - PGA1_c08710 0.88 -0.5 897,968 - -0.5 898,070 + -0.3 898,078 - +0.2 898,078 - -0.8 898,119 - +0.4 898,127 - +0.9 898,149 + -0.8 898,161 + +0.5 898,192 + PGA1_c08720 0.11 +1.3 898,220 + PGA1_c08720 0.12 +0.0 898,259 + PGA1_c08720 0.15 -0.6 898,297 + PGA1_c08720 0.17 -0.1 898,297 + PGA1_c08720 0.17 +0.3 898,297 + PGA1_c08720 0.17 +3.5 898,305 - PGA1_c08720 0.17 -0.5 898,305 - PGA1_c08720 0.17 -2.4 898,305 - PGA1_c08720 0.17 -0.2 898,361 - PGA1_c08720 0.21 +0.9 898,361 - PGA1_c08720 0.21 +1.8 898,361 - PGA1_c08720 0.21 -0.5 898,361 - PGA1_c08720 0.21 +0.6 898,388 + PGA1_c08720 0.22 +0.2 898,429 - PGA1_c08720 0.25 +1.0 898,431 + PGA1_c08720 0.25 +0.8 898,438 + PGA1_c08720 0.25 +0.9 898,451 + PGA1_c08720 0.26 +0.9 898,451 - PGA1_c08720 0.26 +0.5 898,456 - PGA1_c08720 0.26 -0.2 898,456 - PGA1_c08720 0.26 -0.4 898,547 - PGA1_c08720 0.32 -0.3 898,550 - PGA1_c08720 0.32 -0.8 898,579 - PGA1_c08720 0.34 +0.5 898,622 + PGA1_c08720 0.36 +0.1 898,635 - PGA1_c08720 0.37 -0.1 898,655 + PGA1_c08720 0.38 +1.3 898,730 + PGA1_c08720 0.43 +0.5 898,735 + PGA1_c08720 0.43 -1.1 898,735 + PGA1_c08720 0.43 -2.3 898,778 + PGA1_c08720 0.46 -1.2 898,793 + PGA1_c08720 0.46 +2.0 898,900 - PGA1_c08720 0.53 +1.2 898,952 + PGA1_c08720 0.56 -0.6 898,960 + PGA1_c08720 0.56 +0.1 898,960 + PGA1_c08720 0.56 -2.6 898,960 - PGA1_c08720 0.56 +0.3 898,968 - PGA1_c08720 0.57 -3.6 898,968 - PGA1_c08720 0.57 +0.5 898,970 + PGA1_c08720 0.57 -0.8 899,018 - PGA1_c08720 0.60 -0.5 899,018 - PGA1_c08720 0.60 +0.3 899,035 + PGA1_c08720 0.61 -0.4 899,035 + PGA1_c08720 0.61 -0.3 899,035 + PGA1_c08720 0.61 -0.1 899,035 + PGA1_c08720 0.61 +1.2 899,035 + PGA1_c08720 0.61 -0.2 899,040 + PGA1_c08720 0.61 +0.1 899,043 - PGA1_c08720 0.61 +0.4 899,043 - PGA1_c08720 0.61 +0.3 899,043 - PGA1_c08720 0.61 +0.9 899,043 - PGA1_c08720 0.61 +0.5 899,048 - PGA1_c08720 0.62 -0.2 899,067 + PGA1_c08720 0.63 -0.7 899,072 + PGA1_c08720 0.63 -0.1 899,073 - PGA1_c08720 0.63 -0.1 899,075 + PGA1_c08720 0.63 -1.2 899,075 + PGA1_c08720 0.63 +1.6 899,080 - PGA1_c08720 0.64 +0.6 899,083 - PGA1_c08720 0.64 +0.7 899,109 + PGA1_c08720 0.65 -0.4 899,158 + PGA1_c08720 0.68 +0.2 899,265 - PGA1_c08720 0.75 +0.4 899,274 + PGA1_c08720 0.75 -2.2 899,276 + PGA1_c08720 0.75 +0.5 899,277 - PGA1_c08720 0.75 -0.1 899,321 + PGA1_c08720 0.78 +2.1 899,399 + PGA1_c08720 0.82 -0.1 899,409 + PGA1_c08720 0.83 -1.3 899,417 - PGA1_c08720 0.84 -0.5 899,457 + PGA1_c08720 0.86 -0.2 899,457 + PGA1_c08720 0.86 +0.6 899,457 + PGA1_c08720 0.86 +2.0 899,465 - PGA1_c08720 0.86 +1.8 899,465 - PGA1_c08720 0.86 -0.6 899,471 + PGA1_c08720 0.87 -1.3 899,480 - PGA1_c08720 0.87 +1.0 899,484 - PGA1_c08720 0.88 +0.5 899,502 - PGA1_c08720 0.89 +1.2 899,504 + PGA1_c08720 0.89 +0.4 899,514 + PGA1_c08720 0.89 +0.8 899,522 - PGA1_c08720 0.90 +1.5 899,548 + -1.9 899,555 + +0.4 899,580 - +0.9 899,580 - +0.2 899,585 + -0.8 899,626 + +0.4 899,644 + +0.3 899,647 - -1.8 899,649 + -0.5 899,649 + +0.4 899,657 - -0.6 899,657 - +0.7 899,689 + -0.1 899,711 + +1.0 899,717 + -0.9 899,719 + +0.3 899,719 + -1.3 899,719 + +0.9 899,719 + -0.5 899,719 + +1.2 899,719 + +0.3 899,719 + +0.4 899,719 + -0.5 899,719 + +0.3 899,724 + +0.3 899,725 - -0.5 899,727 - +0.7 899,727 - -1.1 899,727 - +1.8 899,727 - +0.3 899,727 - -1.1 899,727 - -0.8 899,727 - +0.8 899,732 - -0.3 899,755 + -0.1 899,756 + +0.6 899,756 + -0.1 899,764 - +0.2 899,764 - -0.3 899,764 - -0.3 899,795 - PGA1_c08730 0.16 +1.4 899,840 - PGA1_c08730 0.42 +0.2 899,840 - PGA1_c08730 0.42 +0.7 899,852 + PGA1_c08730 0.49 +1.5 899,853 + PGA1_c08730 0.50 +0.2 899,857 + PGA1_c08730 0.52 -1.4 899,860 - PGA1_c08730 0.54 -0.5 899,862 - PGA1_c08730 0.55 -0.2 899,890 + PGA1_c08730 0.71 -1.3 899,906 + PGA1_c08730 0.81 -1.4 899,923 + +0.2 900,003 - +0.8 900,012 + -0.7 900,049 - +0.5
Or see this region's nucleotide sequence