Experiment: m.b. Tetracycline 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06150 and PGA1_c06160 are separated by 150 nucleotides PGA1_c06160 and PGA1_c06170 are separated by 91 nucleotides PGA1_c06170 and PGA1_c06180 are separated by 354 nucleotides PGA1_c06180 and PGA1_c06190 are separated by 137 nucleotides PGA1_c06190 and PGA1_c06200 are separated by 64 nucleotides
PGA1_c06150: PGA1_c06150 - Flp pilus assembly protein CpaB-like protein, at 630,014 to 630,874
_c06150
PGA1_c06160: PGA1_c06160 - hypothetical protein, at 631,025 to 631,201
_c06160
PGA1_c06170: PGA1_c06170 - hypothetical protein, at 631,293 to 631,478
_c06170
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
PGA1_c06190: PGA1_c06190 - hypothetical protein, at 632,900 to 633,391
_c06190
PGA1_c06200: PGA1_c06200 - probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B, at 633,456 to 634,085
_c06200
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 630.835 kb on - strand at 630.863 kb on - strand at 630.863 kb on - strand at 630.884 kb on - strand at 630.890 kb on - strand at 630.961 kb on + strand at 630.963 kb on + strand at 631.018 kb on + strand at 631.021 kb on - strand at 631.026 kb on - strand at 631.044 kb on + strand, within PGA1_c06160 at 631.046 kb on + strand, within PGA1_c06160 at 631.085 kb on + strand, within PGA1_c06160 at 631.114 kb on - strand, within PGA1_c06160 at 631.147 kb on + strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.194 kb on - strand at 631.215 kb on + strand at 631.280 kb on + strand at 631.315 kb on - strand, within PGA1_c06170 at 631.322 kb on + strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.341 kb on + strand, within PGA1_c06170 at 631.389 kb on - strand, within PGA1_c06170 at 631.407 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.420 kb on - strand, within PGA1_c06170 at 631.440 kb on + strand, within PGA1_c06170 at 631.478 kb on + strand at 631.480 kb on + strand at 631.486 kb on - strand at 631.488 kb on + strand at 631.488 kb on + strand at 631.496 kb on - strand at 631.539 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.552 kb on - strand at 631.552 kb on - strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.567 kb on - strand at 631.568 kb on + strand at 631.569 kb on + strand at 631.569 kb on + strand at 631.576 kb on + strand at 631.576 kb on - strand at 631.576 kb on - strand at 631.591 kb on - strand at 631.593 kb on + strand at 631.610 kb on - strand at 631.610 kb on - strand at 631.624 kb on + strand at 631.632 kb on - strand at 631.634 kb on + strand at 631.634 kb on + strand at 631.642 kb on - strand at 631.673 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.730 kb on - strand at 631.845 kb on - strand at 631.865 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.897 kb on - strand at 631.920 kb on + strand at 631.920 kb on + strand at 631.928 kb on - strand, within PGA1_c06180 at 631.950 kb on - strand, within PGA1_c06180 at 631.959 kb on - strand, within PGA1_c06180 at 631.982 kb on + strand, within PGA1_c06180 at 631.985 kb on - strand, within PGA1_c06180 at 632.021 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.080 kb on - strand, within PGA1_c06180 at 632.093 kb on + strand, within PGA1_c06180 at 632.140 kb on - strand, within PGA1_c06180 at 632.175 kb on - strand, within PGA1_c06180 at 632.200 kb on + strand, within PGA1_c06180 at 632.313 kb on + strand, within PGA1_c06180 at 632.334 kb on + strand, within PGA1_c06180 at 632.342 kb on - strand, within PGA1_c06180 at 632.353 kb on + strand, within PGA1_c06180 at 632.374 kb on - strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.377 kb on + strand, within PGA1_c06180 at 632.434 kb on - strand, within PGA1_c06180 at 632.449 kb on + strand, within PGA1_c06180 at 632.473 kb on + strand, within PGA1_c06180 at 632.507 kb on - strand, within PGA1_c06180 at 632.519 kb on - strand, within PGA1_c06180 at 632.602 kb on - strand, within PGA1_c06180 at 632.618 kb on - strand, within PGA1_c06180 at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.705 kb on + strand at 632.711 kb on - strand at 632.713 kb on - strand at 632.721 kb on + strand at 632.742 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.768 kb on + strand at 632.774 kb on - strand at 632.776 kb on + strand at 632.776 kb on + strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.776 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.784 kb on - strand at 632.785 kb on - strand at 632.786 kb on - strand at 632.812 kb on + strand at 632.812 kb on + strand at 632.905 kb on - strand at 632.910 kb on + strand at 632.936 kb on + strand at 632.936 kb on + strand at 632.938 kb on + strand at 632.945 kb on - strand at 632.960 kb on + strand, within PGA1_c06190 at 632.966 kb on - strand, within PGA1_c06190 at 632.968 kb on + strand, within PGA1_c06190 at 632.976 kb on - strand, within PGA1_c06190 at 633.002 kb on + strand, within PGA1_c06190 at 633.010 kb on - strand, within PGA1_c06190 at 633.023 kb on + strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.026 kb on - strand, within PGA1_c06190 at 633.039 kb on + strand, within PGA1_c06190 at 633.042 kb on - strand, within PGA1_c06190 at 633.103 kb on - strand, within PGA1_c06190 at 633.121 kb on + strand, within PGA1_c06190 at 633.137 kb on + strand, within PGA1_c06190 at 633.184 kb on - strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.201 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.220 kb on + strand, within PGA1_c06190 at 633.222 kb on + strand, within PGA1_c06190 at 633.228 kb on - strand, within PGA1_c06190 at 633.257 kb on - strand, within PGA1_c06190 at 633.444 kb on + strand at 633.476 kb on + strand at 633.484 kb on - strand at 633.565 kb on - strand, within PGA1_c06200 at 633.610 kb on - strand, within PGA1_c06200 at 633.695 kb on - strand, within PGA1_c06200 at 633.705 kb on + strand, within PGA1_c06200 at 633.713 kb on - strand, within PGA1_c06200 at 633.731 kb on + strand, within PGA1_c06200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.00625 mg/ml remove 630,835 - +0.8 630,863 - -0.9 630,863 - +0.0 630,884 - +0.5 630,890 - -0.1 630,961 + -1.4 630,963 + +0.1 631,018 + +0.6 631,021 - -0.2 631,026 - -0.8 631,044 + PGA1_c06160 0.11 +0.3 631,046 + PGA1_c06160 0.12 -0.0 631,085 + PGA1_c06160 0.34 -0.1 631,114 - PGA1_c06160 0.50 -0.4 631,147 + PGA1_c06160 0.69 -1.2 631,155 - PGA1_c06160 0.73 -0.4 631,155 - PGA1_c06160 0.73 -1.1 631,155 - PGA1_c06160 0.73 -1.9 631,194 - -1.1 631,215 + +1.6 631,280 + +1.1 631,315 - PGA1_c06170 0.12 -1.0 631,322 + PGA1_c06170 0.16 +1.5 631,330 - PGA1_c06170 0.20 -0.9 631,330 - PGA1_c06170 0.20 +1.6 631,330 - PGA1_c06170 0.20 +0.3 631,341 + PGA1_c06170 0.26 -0.4 631,389 - PGA1_c06170 0.52 -1.4 631,407 + PGA1_c06170 0.61 -0.0 631,412 + PGA1_c06170 0.64 +0.6 631,412 + PGA1_c06170 0.64 +0.3 631,420 - PGA1_c06170 0.68 +0.1 631,440 + PGA1_c06170 0.79 +0.8 631,478 + -0.8 631,480 + +0.2 631,486 - -0.7 631,488 + +0.2 631,488 + +0.1 631,496 - +0.7 631,539 + +1.6 631,544 + +0.7 631,544 + +1.0 631,544 + -0.8 631,544 + -1.1 631,544 + +0.9 631,544 + +1.4 631,544 + -0.6 631,544 + +0.9 631,544 + -0.1 631,544 + +1.9 631,552 - +0.4 631,552 - -1.8 631,554 + +0.8 631,554 + +0.1 631,554 + +1.2 631,554 + -1.2 631,554 + +0.1 631,557 - -2.1 631,557 - +2.0 631,557 - +1.1 631,562 - +1.0 631,562 - +0.9 631,562 - -0.9 631,562 - +0.2 631,562 - +0.5 631,567 - -1.5 631,568 + +0.6 631,569 + +1.0 631,569 + +1.1 631,576 + +0.3 631,576 - -1.9 631,576 - -0.0 631,591 - +1.4 631,593 + +0.2 631,610 - -1.5 631,610 - +0.9 631,624 + +0.2 631,632 - +0.6 631,634 + +0.9 631,634 + -1.9 631,642 - +0.6 631,673 - -0.6 631,721 - +3.4 631,721 - +0.5 631,721 - +0.1 631,730 - -0.6 631,845 - -0.4 631,865 + -0.5 631,870 + -0.6 631,870 + +0.7 631,870 + +0.5 631,897 - -1.8 631,920 + -0.5 631,920 + +0.2 631,928 - PGA1_c06180 0.10 -0.1 631,950 - PGA1_c06180 0.13 +0.7 631,959 - PGA1_c06180 0.14 +0.7 631,982 + PGA1_c06180 0.16 +1.3 631,985 - PGA1_c06180 0.16 +2.2 632,021 - PGA1_c06180 0.20 +0.1 632,080 - PGA1_c06180 0.27 +2.6 632,080 - PGA1_c06180 0.27 +0.0 632,093 + PGA1_c06180 0.28 +0.1 632,140 - PGA1_c06180 0.33 +0.4 632,175 - PGA1_c06180 0.37 +0.2 632,200 + PGA1_c06180 0.39 -0.6 632,313 + PGA1_c06180 0.52 +0.6 632,334 + PGA1_c06180 0.54 -0.3 632,342 - PGA1_c06180 0.55 -1.1 632,353 + PGA1_c06180 0.56 +1.3 632,374 - PGA1_c06180 0.58 +0.9 632,377 + PGA1_c06180 0.58 +2.1 632,377 + PGA1_c06180 0.58 +1.6 632,434 - PGA1_c06180 0.65 -1.2 632,449 + PGA1_c06180 0.66 -1.0 632,473 + PGA1_c06180 0.69 -0.1 632,507 - PGA1_c06180 0.72 -0.7 632,519 - PGA1_c06180 0.74 +2.2 632,602 - PGA1_c06180 0.83 -0.0 632,618 - PGA1_c06180 0.84 -2.6 632,705 + +0.5 632,705 + -0.7 632,705 + -1.8 632,705 + +1.4 632,705 + -0.0 632,711 - +0.3 632,713 - +0.6 632,721 + -0.6 632,742 + -0.6 632,768 + -0.8 632,768 + -0.6 632,768 + +1.2 632,768 + +0.4 632,768 + +0.1 632,768 + -0.0 632,768 + -0.1 632,768 + +1.2 632,768 + +0.2 632,768 + +0.6 632,768 + -0.2 632,768 + -0.1 632,768 + -0.9 632,768 + +0.3 632,768 + -0.6 632,768 + +0.6 632,768 + +0.4 632,768 + +0.5 632,768 + -0.4 632,768 + -1.0 632,768 + +1.0 632,768 + -2.5 632,768 + -2.4 632,768 + +0.8 632,768 + -0.2 632,768 + +0.3 632,768 + -0.1 632,768 + -0.4 632,768 + +1.3 632,768 + +0.7 632,768 + +1.5 632,768 + -1.6 632,768 + +0.5 632,768 + +2.2 632,768 + -0.1 632,768 + +1.0 632,768 + +0.1 632,768 + +0.0 632,768 + -0.4 632,768 + -1.1 632,768 + +0.6 632,768 + +0.6 632,768 + -0.3 632,768 + -1.5 632,768 + +1.4 632,768 + +0.2 632,768 + +0.2 632,768 + -0.6 632,768 + +0.0 632,768 + -1.1 632,768 + -0.8 632,768 + +0.2 632,768 + +0.4 632,768 + +0.7 632,768 + +0.5 632,768 + +1.8 632,768 + -0.4 632,768 + -1.9 632,768 + -0.5 632,768 + +1.1 632,768 + -1.8 632,768 + +1.3 632,768 + +2.1 632,768 + -1.1 632,768 + +1.5 632,768 + -0.1 632,768 + -1.3 632,768 + +0.3 632,768 + -1.0 632,768 + +0.2 632,768 + +0.1 632,768 + +1.1 632,768 + -1.8 632,768 + -2.5 632,768 + -1.2 632,768 + +0.5 632,768 + +1.5 632,768 + +0.0 632,768 + -0.2 632,768 + +0.1 632,768 + -0.4 632,768 + -0.4 632,768 + +2.2 632,768 + -0.2 632,768 + +1.6 632,768 + +0.7 632,768 + +2.5 632,768 + +0.9 632,768 + -0.5 632,774 - +0.6 632,776 + -1.1 632,776 + +1.2 632,776 - -2.1 632,776 - +0.6 632,776 - +1.4 632,776 - -0.1 632,776 - -2.2 632,776 - +0.3 632,776 - +1.5 632,776 - -0.3 632,776 - -0.4 632,776 - -0.7 632,776 - -0.0 632,776 - +1.6 632,776 - +0.1 632,776 - -0.5 632,776 - +0.5 632,776 - +1.5 632,776 - -0.2 632,776 - +0.7 632,776 - -1.2 632,776 - +0.3 632,776 - +1.3 632,776 - +0.9 632,776 - -1.8 632,776 - -0.9 632,776 - +1.2 632,776 - +1.1 632,776 - +0.6 632,776 - -0.4 632,776 - -0.2 632,776 - -1.1 632,776 - -0.8 632,776 - -1.5 632,776 - +0.5 632,776 - -0.8 632,776 - -1.2 632,776 - +1.6 632,776 - +1.9 632,776 - -0.2 632,776 - +0.2 632,776 - +0.2 632,776 - +0.7 632,776 - -1.3 632,776 - +0.5 632,776 - +1.1 632,776 - +0.1 632,776 - +0.3 632,776 - +0.9 632,776 - -1.2 632,776 - +0.5 632,776 - -1.5 632,776 - +1.1 632,776 - -1.2 632,776 - +0.2 632,776 - +0.6 632,776 - -0.9 632,776 - -0.6 632,776 - -0.0 632,784 - -1.3 632,784 - -0.4 632,784 - -0.0 632,784 - +0.7 632,784 - +0.8 632,785 - -1.0 632,786 - -0.7 632,812 + +0.1 632,812 + -1.1 632,905 - +0.4 632,910 + +0.8 632,936 + +0.5 632,936 + +1.9 632,938 + -2.8 632,945 - +0.3 632,960 + PGA1_c06190 0.12 -0.5 632,966 - PGA1_c06190 0.13 -0.4 632,968 + PGA1_c06190 0.14 -0.5 632,976 - PGA1_c06190 0.15 -0.4 633,002 + PGA1_c06190 0.21 -1.7 633,010 - PGA1_c06190 0.22 +0.8 633,023 + PGA1_c06190 0.25 +0.7 633,026 - PGA1_c06190 0.26 +1.9 633,026 - PGA1_c06190 0.26 +0.3 633,039 + PGA1_c06190 0.28 +1.4 633,042 - PGA1_c06190 0.29 +1.2 633,103 - PGA1_c06190 0.41 -2.6 633,121 + PGA1_c06190 0.45 -3.0 633,137 + PGA1_c06190 0.48 +1.3 633,184 - PGA1_c06190 0.58 -0.9 633,201 + PGA1_c06190 0.61 -2.9 633,201 + PGA1_c06190 0.61 +1.9 633,201 + PGA1_c06190 0.61 +0.4 633,220 + PGA1_c06190 0.65 -0.8 633,220 + PGA1_c06190 0.65 +1.0 633,222 + PGA1_c06190 0.65 +0.1 633,228 - PGA1_c06190 0.67 -1.7 633,257 - PGA1_c06190 0.73 +0.9 633,444 + +0.7 633,476 + +0.2 633,484 - +0.8 633,565 - PGA1_c06200 0.17 +0.6 633,610 - PGA1_c06200 0.24 -1.9 633,695 - PGA1_c06200 0.38 -1.2 633,705 + PGA1_c06200 0.40 -1.8 633,713 - PGA1_c06200 0.41 -0.5 633,731 + PGA1_c06200 0.44 +0.9
Or see this region's nucleotide sequence