Experiment: m.b. Tetracycline 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01290 and PGA1_262p01300 are separated by 156 nucleotides PGA1_262p01300 and PGA1_262p01310 are separated by 125 nucleotides PGA1_262p01310 and PGA1_262p01320 are separated by 47 nucleotides PGA1_262p01320 and PGA1_262p01330 overlap by 14 nucleotides
PGA1_262p01290: PGA1_262p01290 - transcriptional regulator, AraC family, at 139,970 to 140,977
_262p01290
PGA1_262p01300: PGA1_262p01300 - Cupin domain., at 141,134 to 141,574
_262p01300
PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187
_262p01310
PGA1_262p01320: PGA1_262p01320 - Uncharacterized protein conserved in bacteria, at 143,235 to 143,936
_262p01320
PGA1_262p01330: PGA1_262p01330 - transcriptional regulator, MarR family, at 143,923 to 144,480
_262p01330
Position (kb) 141
142
143
144 Strain fitness (log2 ratio) -1
0
1
2 at 140.908 kb on + strand at 140.950 kb on - strand at 140.962 kb on + strand at 140.988 kb on + strand at 141.098 kb on - strand at 141.178 kb on + strand, within PGA1_262p01300 at 141.197 kb on - strand, within PGA1_262p01300 at 141.357 kb on + strand, within PGA1_262p01300 at 141.407 kb on + strand, within PGA1_262p01300 at 141.476 kb on - strand, within PGA1_262p01300 at 141.523 kb on + strand, within PGA1_262p01300 at 141.557 kb on + strand at 141.729 kb on - strand at 141.802 kb on - strand at 141.924 kb on + strand, within PGA1_262p01310 at 141.947 kb on - strand, within PGA1_262p01310 at 142.011 kb on - strand, within PGA1_262p01310 at 142.041 kb on + strand, within PGA1_262p01310 at 142.218 kb on - strand, within PGA1_262p01310 at 142.435 kb on - strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.566 kb on + strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 142.574 kb on - strand, within PGA1_262p01310 at 143.018 kb on - strand, within PGA1_262p01310 at 143.030 kb on - strand, within PGA1_262p01310 at 143.292 kb on - strand at 143.496 kb on - strand, within PGA1_262p01320 at 143.514 kb on + strand, within PGA1_262p01320 at 143.739 kb on + strand, within PGA1_262p01320 at 143.935 kb on + strand at 144.118 kb on + strand, within PGA1_262p01330
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.00625 mg/ml remove 140,908 + +0.1 140,950 - -0.5 140,962 + +0.7 140,988 + -1.3 141,098 - -0.1 141,178 + PGA1_262p01300 0.10 -0.8 141,197 - PGA1_262p01300 0.14 -1.6 141,357 + PGA1_262p01300 0.51 +0.0 141,407 + PGA1_262p01300 0.62 +1.4 141,476 - PGA1_262p01300 0.78 -0.7 141,523 + PGA1_262p01300 0.88 +0.8 141,557 + +0.6 141,729 - -0.0 141,802 - -0.9 141,924 + PGA1_262p01310 0.15 +1.0 141,947 - PGA1_262p01310 0.17 -0.5 142,011 - PGA1_262p01310 0.21 +0.1 142,041 + PGA1_262p01310 0.23 +2.1 142,218 - PGA1_262p01310 0.35 -0.4 142,435 - PGA1_262p01310 0.49 -0.9 142,566 + PGA1_262p01310 0.58 +1.5 142,566 + PGA1_262p01310 0.58 +0.2 142,574 - PGA1_262p01310 0.59 +0.3 142,574 - PGA1_262p01310 0.59 -0.9 143,018 - PGA1_262p01310 0.89 +1.1 143,030 - PGA1_262p01310 0.89 -0.2 143,292 - +2.0 143,496 - PGA1_262p01320 0.37 +2.1 143,514 + PGA1_262p01320 0.40 -0.5 143,739 + PGA1_262p01320 0.72 -0.9 143,935 + -0.4 144,118 + PGA1_262p01330 0.35 +0.3
Or see this region's nucleotide sequence