Experiment: m.b. Tetracycline 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02900 and PGA1_c02910 are separated by 3 nucleotides PGA1_c02910 and PGA1_c02920 are separated by 15 nucleotides PGA1_c02920 and PGA1_c02930 overlap by 4 nucleotides PGA1_c02930 and PGA1_c02940 are separated by 77 nucleotides
PGA1_c02900: PGA1_c02900 - putative molybdopterin-converting factor subunit 1, at 280,494 to 280,739
_c02900
PGA1_c02910: PGA1_c02910 - molybdopterin-converting factor subunit 2, at 280,743 to 281,204
_c02910
PGA1_c02920: PGA1_c02920 - hypothetical protein, at 281,220 to 281,534
_c02920
PGA1_c02930: PGA1_c02930 - OmpA domain-containing protein, at 281,531 to 283,441
_c02930
PGA1_c02940: PGA1_c02940 - 4-hydroxybenzoate octaprenyltransferase UbiA, at 283,519 to 284,481
_c02940
Position (kb) 281
282
283
284 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 280.610 kb on + strand, within PGA1_c02900 at 280.618 kb on - strand, within PGA1_c02900 at 280.776 kb on - strand at 280.776 kb on - strand at 280.839 kb on + strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.847 kb on - strand, within PGA1_c02910 at 280.913 kb on + strand, within PGA1_c02910 at 281.024 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.056 kb on + strand, within PGA1_c02910 at 281.251 kb on - strand at 281.251 kb on - strand at 281.299 kb on + strand, within PGA1_c02920 at 281.322 kb on + strand, within PGA1_c02920 at 281.340 kb on - strand, within PGA1_c02920 at 281.385 kb on + strand, within PGA1_c02920 at 281.390 kb on + strand, within PGA1_c02920 at 281.411 kb on + strand, within PGA1_c02920 at 281.522 kb on - strand at 281.524 kb on + strand at 281.527 kb on - strand at 281.536 kb on + strand at 281.548 kb on + strand at 281.566 kb on - strand at 281.725 kb on - strand, within PGA1_c02930 at 281.857 kb on + strand, within PGA1_c02930 at 281.941 kb on + strand, within PGA1_c02930 at 281.993 kb on - strand, within PGA1_c02930 at 281.993 kb on - strand, within PGA1_c02930 at 281.998 kb on - strand, within PGA1_c02930 at 282.022 kb on - strand, within PGA1_c02930 at 282.031 kb on + strand, within PGA1_c02930 at 282.052 kb on + strand, within PGA1_c02930 at 282.052 kb on + strand, within PGA1_c02930 at 282.297 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.370 kb on - strand, within PGA1_c02930 at 282.416 kb on + strand, within PGA1_c02930 at 282.424 kb on - strand, within PGA1_c02930 at 282.536 kb on - strand, within PGA1_c02930 at 282.538 kb on + strand, within PGA1_c02930 at 282.596 kb on + strand, within PGA1_c02930 at 282.600 kb on + strand, within PGA1_c02930 at 282.744 kb on - strand, within PGA1_c02930 at 282.794 kb on - strand, within PGA1_c02930 at 282.856 kb on + strand, within PGA1_c02930 at 282.872 kb on - strand, within PGA1_c02930 at 282.966 kb on - strand, within PGA1_c02930 at 282.979 kb on - strand, within PGA1_c02930 at 283.227 kb on + strand, within PGA1_c02930 at 283.237 kb on + strand, within PGA1_c02930 at 283.243 kb on + strand, within PGA1_c02930 at 283.285 kb on + strand at 283.293 kb on - strand at 283.305 kb on + strand at 283.383 kb on - strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.456 kb on + strand at 283.464 kb on - strand at 283.464 kb on - strand at 283.488 kb on - strand at 283.490 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.00625 mg/ml remove 280,610 + PGA1_c02900 0.47 -0.4 280,618 - PGA1_c02900 0.50 -0.5 280,776 - -0.2 280,776 - -1.1 280,839 + PGA1_c02910 0.21 +0.5 280,847 - PGA1_c02910 0.23 +0.8 280,847 - PGA1_c02910 0.23 +0.3 280,913 + PGA1_c02910 0.37 +1.6 281,024 + PGA1_c02910 0.61 +1.6 281,056 + PGA1_c02910 0.68 +0.5 281,056 + PGA1_c02910 0.68 +0.5 281,251 - -0.7 281,251 - -0.3 281,299 + PGA1_c02920 0.25 -2.6 281,322 + PGA1_c02920 0.32 +1.8 281,340 - PGA1_c02920 0.38 -0.8 281,385 + PGA1_c02920 0.52 -1.0 281,390 + PGA1_c02920 0.54 -1.5 281,411 + PGA1_c02920 0.61 -1.3 281,522 - +0.8 281,524 + -1.8 281,527 - -1.9 281,536 + +0.4 281,548 + -0.4 281,566 - +2.5 281,725 - PGA1_c02930 0.10 -2.1 281,857 + PGA1_c02930 0.17 -2.5 281,941 + PGA1_c02930 0.21 -1.0 281,993 - PGA1_c02930 0.24 -0.2 281,993 - PGA1_c02930 0.24 +0.0 281,998 - PGA1_c02930 0.24 -0.5 282,022 - PGA1_c02930 0.26 -2.1 282,031 + PGA1_c02930 0.26 -0.7 282,052 + PGA1_c02930 0.27 -2.9 282,052 + PGA1_c02930 0.27 -1.5 282,297 - PGA1_c02930 0.40 -1.5 282,370 - PGA1_c02930 0.44 +1.8 282,370 - PGA1_c02930 0.44 -2.8 282,370 - PGA1_c02930 0.44 -0.0 282,416 + PGA1_c02930 0.46 -3.1 282,424 - PGA1_c02930 0.47 -0.5 282,536 - PGA1_c02930 0.53 -1.9 282,538 + PGA1_c02930 0.53 -0.8 282,596 + PGA1_c02930 0.56 -1.8 282,600 + PGA1_c02930 0.56 -1.4 282,744 - PGA1_c02930 0.63 -0.4 282,794 - PGA1_c02930 0.66 -1.8 282,856 + PGA1_c02930 0.69 -1.2 282,872 - PGA1_c02930 0.70 -0.7 282,966 - PGA1_c02930 0.75 -1.8 282,979 - PGA1_c02930 0.76 -1.2 283,227 + PGA1_c02930 0.89 -0.7 283,237 + PGA1_c02930 0.89 -1.7 283,243 + PGA1_c02930 0.90 -1.9 283,285 + -2.3 283,293 - -2.0 283,305 + -2.5 283,383 - -1.7 283,456 + -2.0 283,456 + -1.5 283,456 + -0.4 283,456 + -1.0 283,464 - -0.5 283,464 - -2.3 283,488 - -0.0 283,490 + -2.5
Or see this region's nucleotide sequence