Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26870

Experiment: m.b. Tetracycline 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c26850 and PGA1_c26860 overlap by 4 nucleotidesPGA1_c26860 and PGA1_c26870 are separated by 14 nucleotidesPGA1_c26870 and PGA1_c26880 are separated by 1 nucleotides PGA1_c26850: PGA1_c26850 - Predicted metal-binding protein, at 2,802,743 to 2,803,168 _c26850 PGA1_c26860: PGA1_c26860 - putative iron transport system, ATP-binding protein, at 2,803,165 to 2,803,950 _c26860 PGA1_c26870: PGA1_c26870 - putative periplasmic binding protein, at 2,803,965 to 2,804,945 _c26870 PGA1_c26880: PGA1_c26880 - putative iron transport system permease protein, at 2,804,947 to 2,806,026 _c26880 Position (kb) 2803 2804 2805Strain fitness (log2 ratio) -2 -1 0 1 2at 2802.967 kb on + strand, within PGA1_c26850at 2803.961 kb on + strandat 2803.969 kb on - strandat 2804.722 kb on + strand, within PGA1_c26870at 2804.863 kb on + strandat 2804.908 kb on + strandat 2805.055 kb on + strand, within PGA1_c26880at 2805.348 kb on + strand, within PGA1_c26880

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.00625 mg/ml
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2,802,967 + PGA1_c26850 0.53 +0.8
2,803,961 + +0.2
2,803,969 - +0.4
2,804,722 + PGA1_c26870 0.77 +1.8
2,804,863 + -2.5
2,804,908 + -1.0
2,805,055 + PGA1_c26880 0.10 -0.8
2,805,348 + PGA1_c26880 0.37 -0.0

Or see this region's nucleotide sequence