Experiment: m.b. Tetracycline 0.00625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14810 and PGA1_c14820 are separated by 69 nucleotides PGA1_c14820 and PGA1_c14830 are separated by 45 nucleotides PGA1_c14830 and PGA1_c14840 are separated by 1 nucleotides
PGA1_c14810: PGA1_c14810 - nitrogen assimilation regulatory protein NtrX, at 1,535,821 to 1,537,236
_c14810
PGA1_c14820: PGA1_c14820 - hypothetical protein, at 1,537,306 to 1,537,851
_c14820
PGA1_c14830: PGA1_c14830 - trk system potassium uptake protein TrkA, at 1,537,897 to 1,539,273
_c14830
PGA1_c14840: PGA1_c14840 - putative trk system potassium uptake protein TrkH, at 1,539,275 to 1,540,822
_c14840
Position (kb) 1537
1538
1539
1540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1537.224 kb on + strand at 1537.231 kb on + strand at 1537.241 kb on + strand at 1537.241 kb on + strand at 1537.275 kb on - strand at 1537.287 kb on + strand at 1537.295 kb on - strand at 1537.432 kb on + strand, within PGA1_c14820 at 1537.477 kb on - strand, within PGA1_c14820 at 1537.477 kb on - strand, within PGA1_c14820 at 1537.492 kb on + strand, within PGA1_c14820 at 1537.505 kb on - strand, within PGA1_c14820 at 1537.522 kb on + strand, within PGA1_c14820 at 1537.559 kb on - strand, within PGA1_c14820 at 1537.653 kb on + strand, within PGA1_c14820 at 1537.653 kb on + strand, within PGA1_c14820 at 1537.658 kb on + strand, within PGA1_c14820 at 1537.661 kb on - strand, within PGA1_c14820 at 1537.661 kb on - strand, within PGA1_c14820 at 1537.711 kb on + strand, within PGA1_c14820 at 1537.719 kb on - strand, within PGA1_c14820 at 1537.737 kb on + strand, within PGA1_c14820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Tetracycline 0.00625 mg/ml remove 1,537,224 + -0.1 1,537,231 + -1.3 1,537,241 + +0.4 1,537,241 + +1.2 1,537,275 - +2.1 1,537,287 + +1.4 1,537,295 - +0.7 1,537,432 + PGA1_c14820 0.23 -0.6 1,537,477 - PGA1_c14820 0.31 -1.0 1,537,477 - PGA1_c14820 0.31 -1.8 1,537,492 + PGA1_c14820 0.34 -0.6 1,537,505 - PGA1_c14820 0.36 +0.8 1,537,522 + PGA1_c14820 0.40 -0.6 1,537,559 - PGA1_c14820 0.46 +1.9 1,537,653 + PGA1_c14820 0.64 -1.5 1,537,653 + PGA1_c14820 0.64 -0.6 1,537,658 + PGA1_c14820 0.64 +1.7 1,537,661 - PGA1_c14820 0.65 -0.8 1,537,661 - PGA1_c14820 0.65 +0.1 1,537,711 + PGA1_c14820 0.74 +0.3 1,537,719 - PGA1_c14820 0.76 +0.1 1,537,737 + PGA1_c14820 0.79 -0.6
Or see this region's nucleotide sequence