Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11955

Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11950 and BWI76_RS11955 are separated by 135 nucleotidesBWI76_RS11955 and BWI76_RS11960 are separated by 6 nucleotides BWI76_RS11950: BWI76_RS11950 - phosphatidylglycerophosphatase B, at 2,516,820 to 2,517,587 _RS11950 BWI76_RS11955: BWI76_RS11955 - hypothetical protein, at 2,517,723 to 2,518,031 _RS11955 BWI76_RS11960: BWI76_RS11960 - lipopolysaccharide assembly protein LapB, at 2,518,038 to 2,519,207 _RS11960 Position (kb) 2517 2518 2519Strain fitness (log2 ratio) -1 0 1at 2516.753 kb on - strandat 2516.942 kb on + strand, within BWI76_RS11950at 2516.947 kb on - strand, within BWI76_RS11950at 2517.084 kb on + strand, within BWI76_RS11950at 2517.098 kb on - strand, within BWI76_RS11950at 2517.339 kb on + strand, within BWI76_RS11950at 2517.340 kb on + strand, within BWI76_RS11950at 2517.345 kb on + strand, within BWI76_RS11950at 2517.523 kb on - strandat 2517.610 kb on - strandat 2517.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x
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2,516,753 - -1.2
2,516,942 + BWI76_RS11950 0.16 -0.7
2,516,947 - BWI76_RS11950 0.17 -0.3
2,517,084 + BWI76_RS11950 0.34 -0.3
2,517,098 - BWI76_RS11950 0.36 +0.4
2,517,339 + BWI76_RS11950 0.68 -0.7
2,517,340 + BWI76_RS11950 0.68 +0.4
2,517,345 + BWI76_RS11950 0.68 -1.2
2,517,523 - -0.3
2,517,610 - +0.0
2,517,649 - +0.6

Or see this region's nucleotide sequence