Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11865

Experiment: RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11860 and BWI76_RS11865 are separated by 358 nucleotidesBWI76_RS11865 and BWI76_RS11870 are separated by 9 nucleotidesBWI76_RS11870 and BWI76_RS11875 are separated by 29 nucleotides BWI76_RS11860: BWI76_RS11860 - anthranilate synthase component I, at 2,493,929 to 2,495,491 _RS11860 BWI76_RS11865: BWI76_RS11865 - phosphatase, at 2,495,850 to 2,496,719 _RS11865 BWI76_RS11870: BWI76_RS11870 - hypothetical protein, at 2,496,729 to 2,497,349 _RS11870 BWI76_RS11875: BWI76_RS11875 - hypothetical protein, at 2,497,379 to 2,499,277 _RS11875 Position (kb) 2495 2496 2497Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2495.032 kb on + strand, within BWI76_RS11860at 2495.141 kb on - strand, within BWI76_RS11860at 2495.173 kb on + strand, within BWI76_RS11860at 2495.199 kb on + strand, within BWI76_RS11860at 2495.240 kb on - strand, within BWI76_RS11860at 2495.373 kb on + strandat 2495.453 kb on + strandat 2495.476 kb on + strandat 2495.484 kb on - strandat 2495.946 kb on + strand, within BWI76_RS11865at 2496.480 kb on - strand, within BWI76_RS11865at 2496.541 kb on - strand, within BWI76_RS11865at 2496.588 kb on + strand, within BWI76_RS11865at 2496.691 kb on + strandat 2496.691 kb on + strandat 2496.699 kb on - strandat 2496.699 kb on - strandat 2496.815 kb on - strand, within BWI76_RS11870at 2496.927 kb on - strand, within BWI76_RS11870at 2497.015 kb on + strand, within BWI76_RS11870at 2497.072 kb on + strand, within BWI76_RS11870at 2497.083 kb on + strand, within BWI76_RS11870at 2497.205 kb on + strand, within BWI76_RS11870at 2497.205 kb on + strand, within BWI76_RS11870at 2497.423 kb on + strandat 2497.479 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x
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2,495,032 + BWI76_RS11860 0.71 -2.9
2,495,141 - BWI76_RS11860 0.78 -5.3
2,495,173 + BWI76_RS11860 0.80 -4.3
2,495,199 + BWI76_RS11860 0.81 -2.0
2,495,240 - BWI76_RS11860 0.84 -1.5
2,495,373 + -5.3
2,495,453 + -3.0
2,495,476 + -5.0
2,495,484 - -3.8
2,495,946 + BWI76_RS11865 0.11 -0.1
2,496,480 - BWI76_RS11865 0.72 +1.3
2,496,541 - BWI76_RS11865 0.79 +0.4
2,496,588 + BWI76_RS11865 0.85 -0.7
2,496,691 + -0.3
2,496,691 + +1.1
2,496,699 - -0.5
2,496,699 - -0.1
2,496,815 - BWI76_RS11870 0.14 +1.2
2,496,927 - BWI76_RS11870 0.32 -0.1
2,497,015 + BWI76_RS11870 0.46 -0.1
2,497,072 + BWI76_RS11870 0.55 -0.2
2,497,083 + BWI76_RS11870 0.57 -0.1
2,497,205 + BWI76_RS11870 0.77 -0.9
2,497,205 + BWI76_RS11870 0.77 +0.1
2,497,423 + +0.4
2,497,479 + -0.1

Or see this region's nucleotide sequence