Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22605 and HSERO_RS22610 are separated by 12 nucleotides HSERO_RS22610 and HSERO_RS22615 are separated by 63 nucleotides HSERO_RS22615 and HSERO_RS22620 are separated by 82 nucleotides HSERO_RS22620 and HSERO_RS22625 are separated by 181 nucleotides
HSERO_RS22605: HSERO_RS22605 - histidine kinase, at 5,182,531 to 5,184,087
_RS22605
HSERO_RS22610: HSERO_RS22610 - AraC family transcriptional regulator, at 5,184,100 to 5,184,999
_RS22610
HSERO_RS22615: HSERO_RS22615 - transcriptional regulator, at 5,185,063 to 5,185,701
_RS22615
HSERO_RS22620: HSERO_RS22620 - membrane protein, at 5,185,784 to 5,186,236
_RS22620
HSERO_RS22625: HSERO_RS22625 - LysR family transcriptional regulator, at 5,186,418 to 5,187,323
_RS22625
Position (kb) 5185
5186 Strain fitness (log2 ratio) -1
0
1 at 5184.245 kb on + strand, within HSERO_RS22610 at 5184.246 kb on + strand, within HSERO_RS22610 at 5184.368 kb on + strand, within HSERO_RS22610 at 5184.481 kb on + strand, within HSERO_RS22610 at 5184.540 kb on + strand, within HSERO_RS22610 at 5184.630 kb on + strand, within HSERO_RS22610 at 5184.655 kb on + strand, within HSERO_RS22610 at 5184.738 kb on - strand, within HSERO_RS22610 at 5184.926 kb on - strand at 5185.053 kb on + strand at 5185.110 kb on + strand at 5185.237 kb on - strand, within HSERO_RS22615 at 5185.304 kb on - strand, within HSERO_RS22615 at 5185.565 kb on + strand, within HSERO_RS22615 at 5185.638 kb on - strand at 5185.874 kb on + strand, within HSERO_RS22620 at 5185.874 kb on + strand, within HSERO_RS22620 at 5186.169 kb on - strand, within HSERO_RS22620 at 5186.178 kb on + strand, within HSERO_RS22620 at 5186.213 kb on - strand at 5186.421 kb on + strand at 5186.535 kb on - strand, within HSERO_RS22625
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB remove 5,184,245 + HSERO_RS22610 0.16 +0.2 5,184,246 + HSERO_RS22610 0.16 -0.5 5,184,368 + HSERO_RS22610 0.30 +1.2 5,184,481 + HSERO_RS22610 0.42 -0.8 5,184,540 + HSERO_RS22610 0.49 -1.1 5,184,630 + HSERO_RS22610 0.59 +0.4 5,184,655 + HSERO_RS22610 0.62 +0.7 5,184,738 - HSERO_RS22610 0.71 -0.2 5,184,926 - +0.0 5,185,053 + -0.0 5,185,110 + -0.5 5,185,237 - HSERO_RS22615 0.27 +0.0 5,185,304 - HSERO_RS22615 0.38 +0.6 5,185,565 + HSERO_RS22615 0.79 +1.0 5,185,638 - +1.0 5,185,874 + HSERO_RS22620 0.20 -0.3 5,185,874 + HSERO_RS22620 0.20 +0.4 5,186,169 - HSERO_RS22620 0.85 -0.7 5,186,178 + HSERO_RS22620 0.87 -0.3 5,186,213 - +0.2 5,186,421 + +0.4 5,186,535 - HSERO_RS22625 0.13 +1.1
Or see this region's nucleotide sequence