Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22555 and HSERO_RS22560 are separated by 1 nucleotides HSERO_RS22560 and HSERO_RS22565 are separated by 129 nucleotides HSERO_RS22565 and HSERO_RS22570 are separated by 132 nucleotides HSERO_RS22570 and HSERO_RS22575 are separated by 2 nucleotides
HSERO_RS22555: HSERO_RS22555 - sensor protein, at 5,174,019 to 5,175,047
_RS22555
HSERO_RS22560: HSERO_RS22560 - RNA polymerase sigma factor, at 5,175,049 to 5,175,585
_RS22560
HSERO_RS22565: HSERO_RS22565 - AraC family transcriptional regulator, at 5,175,715 to 5,176,575
_RS22565
HSERO_RS22570: HSERO_RS22570 - DNA-binding protein, at 5,176,708 to 5,177,241
_RS22570
HSERO_RS22575: HSERO_RS22575 - arylesterase, at 5,177,244 to 5,178,071
_RS22575
Position (kb) 5175
5176
5177 Strain fitness (log2 ratio) -2
-1
0
1 at 5174.767 kb on - strand at 5174.838 kb on + strand, within HSERO_RS22555 at 5175.019 kb on + strand at 5175.041 kb on + strand at 5175.101 kb on + strand at 5175.114 kb on - strand, within HSERO_RS22560 at 5175.296 kb on - strand, within HSERO_RS22560 at 5175.321 kb on + strand, within HSERO_RS22560 at 5175.321 kb on + strand, within HSERO_RS22560 at 5175.329 kb on - strand, within HSERO_RS22560 at 5175.480 kb on + strand, within HSERO_RS22560 at 5175.480 kb on + strand, within HSERO_RS22560 at 5175.488 kb on - strand, within HSERO_RS22560 at 5175.529 kb on - strand, within HSERO_RS22560 at 5175.655 kb on - strand at 5175.701 kb on + strand at 5175.719 kb on - strand at 5175.773 kb on + strand at 5175.844 kb on - strand, within HSERO_RS22565 at 5175.972 kb on + strand, within HSERO_RS22565 at 5176.150 kb on + strand, within HSERO_RS22565 at 5176.418 kb on + strand, within HSERO_RS22565 at 5176.418 kb on + strand, within HSERO_RS22565 at 5176.760 kb on - strand at 5176.782 kb on + strand, within HSERO_RS22570 at 5176.818 kb on + strand, within HSERO_RS22570 at 5176.818 kb on + strand, within HSERO_RS22570 at 5176.878 kb on + strand, within HSERO_RS22570 at 5177.011 kb on + strand, within HSERO_RS22570 at 5177.257 kb on - strand at 5177.280 kb on - strand at 5177.345 kb on + strand, within HSERO_RS22575 at 5177.381 kb on - strand, within HSERO_RS22575 at 5177.417 kb on - strand, within HSERO_RS22575 at 5177.471 kb on - strand, within HSERO_RS22575 at 5177.496 kb on - strand, within HSERO_RS22575 at 5177.537 kb on + strand, within HSERO_RS22575
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB remove 5,174,767 - -2.1 5,174,838 + HSERO_RS22555 0.80 -0.4 5,175,019 + -0.3 5,175,041 + +0.4 5,175,101 + -0.2 5,175,114 - HSERO_RS22560 0.12 -0.8 5,175,296 - HSERO_RS22560 0.46 -1.6 5,175,321 + HSERO_RS22560 0.51 +0.9 5,175,321 + HSERO_RS22560 0.51 -0.7 5,175,329 - HSERO_RS22560 0.52 +0.6 5,175,480 + HSERO_RS22560 0.80 -0.3 5,175,480 + HSERO_RS22560 0.80 +0.7 5,175,488 - HSERO_RS22560 0.82 -0.7 5,175,529 - HSERO_RS22560 0.89 +0.4 5,175,655 - +0.6 5,175,701 + +0.1 5,175,719 - +0.3 5,175,773 + +0.3 5,175,844 - HSERO_RS22565 0.15 +1.3 5,175,972 + HSERO_RS22565 0.30 +0.7 5,176,150 + HSERO_RS22565 0.51 +0.6 5,176,418 + HSERO_RS22565 0.82 +0.3 5,176,418 + HSERO_RS22565 0.82 -2.5 5,176,760 - -0.2 5,176,782 + HSERO_RS22570 0.14 -0.4 5,176,818 + HSERO_RS22570 0.21 -0.7 5,176,818 + HSERO_RS22570 0.21 -0.1 5,176,878 + HSERO_RS22570 0.32 +0.7 5,177,011 + HSERO_RS22570 0.57 +0.1 5,177,257 - +0.4 5,177,280 - +0.1 5,177,345 + HSERO_RS22575 0.12 +0.4 5,177,381 - HSERO_RS22575 0.17 -0.5 5,177,417 - HSERO_RS22575 0.21 +0.0 5,177,471 - HSERO_RS22575 0.27 -0.4 5,177,496 - HSERO_RS22575 0.30 -1.3 5,177,537 + HSERO_RS22575 0.35 -0.8
Or see this region's nucleotide sequence