Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20765

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS20755 and HSERO_RS20760 overlap by 23 nucleotidesHSERO_RS20760 and HSERO_RS20765 are separated by 114 nucleotidesHSERO_RS20765 and HSERO_RS20770 are separated by 83 nucleotides HSERO_RS20755: HSERO_RS20755 - cytochrome C oxidase subunit I, at 4,755,618 to 4,756,253 _RS20755 HSERO_RS20760: HSERO_RS20760 - hypothetical protein, at 4,756,231 to 4,756,953 _RS20760 HSERO_RS20765: HSERO_RS20765 - membrane protein, at 4,757,068 to 4,757,268 _RS20765 HSERO_RS20770: HSERO_RS20770 - MFS transporter, at 4,757,352 to 4,758,212 _RS20770 Position (kb) 4757 4758Strain fitness (log2 ratio) -1 0 1 2at 4756.306 kb on + strand, within HSERO_RS20760at 4756.309 kb on - strand, within HSERO_RS20760at 4756.550 kb on - strand, within HSERO_RS20760at 4756.795 kb on + strand, within HSERO_RS20760at 4756.930 kb on - strandat 4756.930 kb on - strandat 4757.148 kb on + strand, within HSERO_RS20765at 4757.283 kb on - strandat 4757.343 kb on + strandat 4757.376 kb on - strandat 4757.409 kb on + strandat 4757.439 kb on - strand, within HSERO_RS20770at 4757.454 kb on - strand, within HSERO_RS20770at 4757.497 kb on - strand, within HSERO_RS20770at 4757.587 kb on + strand, within HSERO_RS20770at 4757.947 kb on - strand, within HSERO_RS20770at 4758.131 kb on + strandat 4758.246 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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4,756,306 + HSERO_RS20760 0.10 -0.2
4,756,309 - HSERO_RS20760 0.11 +0.2
4,756,550 - HSERO_RS20760 0.44 +0.6
4,756,795 + HSERO_RS20760 0.78 +0.7
4,756,930 - -0.2
4,756,930 - -0.0
4,757,148 + HSERO_RS20765 0.40 +0.5
4,757,283 - -0.3
4,757,343 + +0.3
4,757,376 - -0.3
4,757,409 + +0.4
4,757,439 - HSERO_RS20770 0.10 -0.3
4,757,454 - HSERO_RS20770 0.12 -0.9
4,757,497 - HSERO_RS20770 0.17 -0.2
4,757,587 + HSERO_RS20770 0.27 +0.7
4,757,947 - HSERO_RS20770 0.69 +0.6
4,758,131 + +2.5
4,758,246 + -0.1

Or see this region's nucleotide sequence