Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS20580 and HSERO_RS20585 are separated by 40 nucleotides HSERO_RS20585 and HSERO_RS20590 are separated by 121 nucleotides
HSERO_RS20580: HSERO_RS20580 - hypothetical protein, at 4,719,085 to 4,720,845
_RS20580
HSERO_RS20585: HSERO_RS20585 - ABC transporter permease, at 4,720,886 to 4,721,938
_RS20585
HSERO_RS20590: HSERO_RS20590 - fused 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase and oxepin-CoA hydrolase (EC 3.3.2.12; EC 1.2.1.91) <small>(from data)</small>, at 4,722,060 to 4,724,120
_RS20590
Position (kb) 4720
4721
4722 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4720.013 kb on - strand, within HSERO_RS20580 at 4720.107 kb on + strand, within HSERO_RS20580 at 4720.189 kb on - strand at 4720.369 kb on + strand, within HSERO_RS20580 at 4720.498 kb on + strand, within HSERO_RS20580 at 4720.504 kb on + strand, within HSERO_RS20580 at 4720.517 kb on - strand, within HSERO_RS20580 at 4720.520 kb on + strand, within HSERO_RS20580 at 4720.542 kb on + strand at 4720.596 kb on + strand, within HSERO_RS20580 at 4720.933 kb on + strand at 4721.358 kb on + strand, within HSERO_RS20585 at 4721.565 kb on + strand, within HSERO_RS20585 at 4721.565 kb on + strand, within HSERO_RS20585 at 4721.592 kb on - strand, within HSERO_RS20585 at 4721.627 kb on - strand, within HSERO_RS20585 at 4721.916 kb on - strand at 4721.927 kb on - strand at 4721.972 kb on + strand at 4721.975 kb on - strand at 4722.110 kb on + strand at 4722.293 kb on + strand, within HSERO_RS20590 at 4722.621 kb on + strand, within HSERO_RS20590 at 4722.890 kb on - strand, within HSERO_RS20590
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB remove 4,720,013 - HSERO_RS20580 0.53 +0.2 4,720,107 + HSERO_RS20580 0.58 -1.4 4,720,189 - -2.1 4,720,369 + HSERO_RS20580 0.73 +0.1 4,720,498 + HSERO_RS20580 0.80 +0.5 4,720,504 + HSERO_RS20580 0.81 -0.3 4,720,517 - HSERO_RS20580 0.81 -1.8 4,720,520 + HSERO_RS20580 0.81 +2.5 4,720,542 + -1.1 4,720,596 + HSERO_RS20580 0.86 -1.4 4,720,933 + +0.1 4,721,358 + HSERO_RS20585 0.45 +2.4 4,721,565 + HSERO_RS20585 0.64 -0.2 4,721,565 + HSERO_RS20585 0.64 -0.1 4,721,592 - HSERO_RS20585 0.67 -0.6 4,721,627 - HSERO_RS20585 0.70 +0.9 4,721,916 - +0.4 4,721,927 - +0.1 4,721,972 + +2.5 4,721,975 - +0.5 4,722,110 + +0.9 4,722,293 + HSERO_RS20590 0.11 -0.6 4,722,621 + HSERO_RS20590 0.27 +0.1 4,722,890 - HSERO_RS20590 0.40 -0.4
Or see this region's nucleotide sequence