Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS19985

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS19980 and HSERO_RS19985 overlap by 4 nucleotidesHSERO_RS19985 and HSERO_RS19990 are separated by 223 nucleotides HSERO_RS19980: HSERO_RS19980 - ABC transporter permease, at 4,585,103 to 4,586,119 _RS19980 HSERO_RS19985: HSERO_RS19985 - ABC transporter permease, at 4,586,116 to 4,586,982 _RS19985 HSERO_RS19990: HSERO_RS19990 - acetyl-CoA acetyltransferase, at 4,587,206 to 4,588,408 _RS19990 Position (kb) 4586 4587Strain fitness (log2 ratio) -1 0 1 2 3at 4585.265 kb on - strand, within HSERO_RS19980at 4585.284 kb on + strand, within HSERO_RS19980at 4585.461 kb on - strandat 4585.699 kb on + strand, within HSERO_RS19980at 4585.854 kb on + strand, within HSERO_RS19980at 4585.855 kb on + strand, within HSERO_RS19980at 4585.962 kb on + strand, within HSERO_RS19980at 4586.079 kb on + strandat 4586.286 kb on + strand, within HSERO_RS19985at 4586.306 kb on - strand, within HSERO_RS19985at 4586.382 kb on + strand, within HSERO_RS19985at 4586.481 kb on - strand, within HSERO_RS19985at 4586.729 kb on - strand, within HSERO_RS19985at 4586.771 kb on + strand, within HSERO_RS19985at 4586.778 kb on - strand, within HSERO_RS19985at 4586.821 kb on - strand, within HSERO_RS19985at 4586.826 kb on - strand, within HSERO_RS19985at 4586.935 kb on + strandat 4587.266 kb on - strandat 4587.501 kb on - strand, within HSERO_RS19990at 4587.514 kb on - strand, within HSERO_RS19990at 4587.693 kb on + strand, within HSERO_RS19990at 4587.773 kb on - strand, within HSERO_RS19990at 4587.871 kb on - strand, within HSERO_RS19990

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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4,585,265 - HSERO_RS19980 0.16 +0.8
4,585,284 + HSERO_RS19980 0.18 +0.2
4,585,461 - +0.7
4,585,699 + HSERO_RS19980 0.59 +0.1
4,585,854 + HSERO_RS19980 0.74 -0.5
4,585,855 + HSERO_RS19980 0.74 -0.3
4,585,962 + HSERO_RS19980 0.84 +0.0
4,586,079 + +0.8
4,586,286 + HSERO_RS19985 0.20 -0.0
4,586,306 - HSERO_RS19985 0.22 +3.1
4,586,382 + HSERO_RS19985 0.31 -0.9
4,586,481 - HSERO_RS19985 0.42 +1.4
4,586,729 - HSERO_RS19985 0.71 +3.6
4,586,771 + HSERO_RS19985 0.76 -0.5
4,586,778 - HSERO_RS19985 0.76 +1.4
4,586,821 - HSERO_RS19985 0.81 +0.0
4,586,826 - HSERO_RS19985 0.82 +0.8
4,586,935 + -0.0
4,587,266 - -0.3
4,587,501 - HSERO_RS19990 0.25 -0.1
4,587,514 - HSERO_RS19990 0.26 -0.4
4,587,693 + HSERO_RS19990 0.40 +0.4
4,587,773 - HSERO_RS19990 0.47 +0.4
4,587,871 - HSERO_RS19990 0.55 +0.5

Or see this region's nucleotide sequence