Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18195 and HSERO_RS18200 are separated by 60 nucleotides HSERO_RS18200 and HSERO_RS18205 overlap by 4 nucleotides HSERO_RS18205 and HSERO_RS18210 are separated by 91 nucleotides HSERO_RS18210 and HSERO_RS18215 overlap by 1 nucleotides HSERO_RS18215 and HSERO_RS18220 overlap by 4 nucleotides
HSERO_RS18195: HSERO_RS18195 - XRE family transcriptional regulator, at 4,181,842 to 4,182,501
_RS18195
HSERO_RS18200: HSERO_RS18200 - RNA-binding protein, at 4,182,562 to 4,182,783
_RS18200
HSERO_RS18205: HSERO_RS18205 - hypothetical protein, at 4,182,780 to 4,183,397
_RS18205
HSERO_RS18210: HSERO_RS18210 - hypothetical protein, at 4,183,489 to 4,184,001
_RS18210
HSERO_RS18215: HSERO_RS18215 - Tfp pilus assembly transmembrane PilW protein, at 4,184,001 to 4,184,885
_RS18215
HSERO_RS18220: HSERO_RS18220 - pilus assembly protein, at 4,184,882 to 4,185,487
_RS18220
Position (kb) 4183
4184
4185 Strain fitness (log2 ratio) -2
-1
0
1 at 4182.495 kb on + strand at 4182.495 kb on + strand at 4182.544 kb on + strand at 4182.612 kb on - strand, within HSERO_RS18200 at 4182.708 kb on - strand, within HSERO_RS18200 at 4182.742 kb on - strand, within HSERO_RS18200 at 4183.050 kb on + strand, within HSERO_RS18205 at 4183.103 kb on + strand, within HSERO_RS18205 at 4183.139 kb on - strand, within HSERO_RS18205 at 4183.228 kb on - strand, within HSERO_RS18205 at 4183.230 kb on + strand, within HSERO_RS18205 at 4183.399 kb on - strand at 4183.559 kb on + strand, within HSERO_RS18210 at 4183.684 kb on + strand, within HSERO_RS18210 at 4183.770 kb on - strand, within HSERO_RS18210 at 4184.227 kb on - strand, within HSERO_RS18215 at 4184.269 kb on + strand, within HSERO_RS18215 at 4184.365 kb on + strand, within HSERO_RS18215 at 4184.380 kb on + strand, within HSERO_RS18215 at 4184.405 kb on + strand, within HSERO_RS18215 at 4184.480 kb on - strand, within HSERO_RS18215 at 4184.665 kb on + strand, within HSERO_RS18215 at 4184.754 kb on - strand, within HSERO_RS18215 at 4184.866 kb on + strand at 4184.945 kb on - strand, within HSERO_RS18220
Per-strain Table
Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB remove 4,182,495 + +0.2 4,182,495 + -1.9 4,182,544 + +0.1 4,182,612 - HSERO_RS18200 0.23 -0.1 4,182,708 - HSERO_RS18200 0.66 +0.2 4,182,742 - HSERO_RS18200 0.81 +0.1 4,183,050 + HSERO_RS18205 0.44 +0.1 4,183,103 + HSERO_RS18205 0.52 -0.0 4,183,139 - HSERO_RS18205 0.58 -0.6 4,183,228 - HSERO_RS18205 0.72 +0.6 4,183,230 + HSERO_RS18205 0.73 -0.7 4,183,399 - -0.2 4,183,559 + HSERO_RS18210 0.14 -0.3 4,183,684 + HSERO_RS18210 0.38 +1.5 4,183,770 - HSERO_RS18210 0.55 +0.1 4,184,227 - HSERO_RS18215 0.26 -0.4 4,184,269 + HSERO_RS18215 0.30 +0.0 4,184,365 + HSERO_RS18215 0.41 -0.6 4,184,380 + HSERO_RS18215 0.43 -0.4 4,184,405 + HSERO_RS18215 0.46 +0.0 4,184,480 - HSERO_RS18215 0.54 +0.4 4,184,665 + HSERO_RS18215 0.75 +0.6 4,184,754 - HSERO_RS18215 0.85 +0.6 4,184,866 + -0.1 4,184,945 - HSERO_RS18220 0.10 +0.0
Or see this region's nucleotide sequence