Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS18115

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS18115 and HSERO_RS18125 are separated by 961 nucleotides HSERO_RS18115: HSERO_RS18115 - hypothetical protein, at 4,162,166 to 4,162,468 _RS18115 HSERO_RS18125: HSERO_RS18125 - alkylhydroperoxidase, at 4,163,430 to 4,163,996 _RS18125 Position (kb) 4162 4163Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4162.232 kb on - strand, within HSERO_RS18115at 4162.443 kb on - strandat 4162.472 kb on - strandat 4162.516 kb on + strandat 4162.596 kb on + strandat 4162.639 kb on - strandat 4162.814 kb on + strandat 4163.046 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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4,162,232 - HSERO_RS18115 0.22 +0.4
4,162,443 - -0.3
4,162,472 - -0.0
4,162,516 + -0.2
4,162,596 + +2.9
4,162,639 - -2.7
4,162,814 + -0.6
4,163,046 + +1.1

Or see this region's nucleotide sequence