Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15355

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS15345 and HSERO_RS15350 are separated by 36 nucleotidesHSERO_RS15350 and HSERO_RS15355 are separated by 64 nucleotidesHSERO_RS15355 and HSERO_RS15360 are separated by 80 nucleotidesHSERO_RS15360 and HSERO_RS15365 are separated by 206 nucleotides HSERO_RS15345: HSERO_RS15345 - cytochrome BD oxidase subunit II, at 3,514,765 to 3,515,904 _RS15345 HSERO_RS15350: HSERO_RS15350 - membrane protein, at 3,515,941 to 3,516,111 _RS15350 HSERO_RS15355: HSERO_RS15355 - hypothetical protein, at 3,516,176 to 3,516,712 _RS15355 HSERO_RS15360: HSERO_RS15360 - regulator of disulfide bond formation redox protein, at 3,516,793 to 3,517,227 _RS15360 HSERO_RS15365: HSERO_RS15365 - MarR family transcriptional regulator, at 3,517,434 to 3,517,919 _RS15365 Position (kb) 3516 3517Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3515.176 kb on + strand, within HSERO_RS15345at 3515.323 kb on + strand, within HSERO_RS15345at 3515.794 kb on + strandat 3515.843 kb on - strandat 3515.979 kb on - strand, within HSERO_RS15350at 3516.036 kb on + strand, within HSERO_RS15350at 3516.296 kb on + strand, within HSERO_RS15355at 3516.311 kb on - strand, within HSERO_RS15355at 3516.576 kb on - strand, within HSERO_RS15355at 3516.802 kb on + strandat 3516.853 kb on - strand, within HSERO_RS15360at 3516.882 kb on - strandat 3516.892 kb on + strand, within HSERO_RS15360at 3517.112 kb on + strand, within HSERO_RS15360at 3517.203 kb on - strandat 3517.283 kb on - strandat 3517.359 kb on - strandat 3517.397 kb on - strandat 3517.530 kb on - strand, within HSERO_RS15365at 3517.543 kb on + strand, within HSERO_RS15365at 3517.543 kb on + strand, within HSERO_RS15365at 3517.642 kb on + strand, within HSERO_RS15365

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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3,515,176 + HSERO_RS15345 0.36 +0.1
3,515,323 + HSERO_RS15345 0.49 -0.4
3,515,794 + -0.7
3,515,843 - +0.3
3,515,979 - HSERO_RS15350 0.22 +2.1
3,516,036 + HSERO_RS15350 0.56 +0.1
3,516,296 + HSERO_RS15355 0.22 +0.1
3,516,311 - HSERO_RS15355 0.25 +0.6
3,516,576 - HSERO_RS15355 0.74 +1.1
3,516,802 + +0.4
3,516,853 - HSERO_RS15360 0.14 +0.4
3,516,882 - -2.0
3,516,892 + HSERO_RS15360 0.23 -0.0
3,517,112 + HSERO_RS15360 0.73 +0.2
3,517,203 - -1.3
3,517,283 - -0.3
3,517,359 - -0.1
3,517,397 - -0.1
3,517,530 - HSERO_RS15365 0.20 +3.6
3,517,543 + HSERO_RS15365 0.22 +0.3
3,517,543 + HSERO_RS15365 0.22 -0.9
3,517,642 + HSERO_RS15365 0.43 -0.1

Or see this region's nucleotide sequence