Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13900

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS13895 and HSERO_RS13900 overlap by 4 nucleotidesHSERO_RS13900 and HSERO_RS13905 are separated by 35 nucleotidesHSERO_RS13905 and HSERO_RS13910 are separated by 54 nucleotides HSERO_RS13895: HSERO_RS13895 - diguanylate cyclase, at 3,158,542 to 3,160,146 _RS13895 HSERO_RS13900: HSERO_RS13900 - transporter, at 3,160,143 to 3,160,754 _RS13900 HSERO_RS13905: HSERO_RS13905 - cell division protein FtsB, at 3,160,790 to 3,161,182 _RS13905 HSERO_RS13910: HSERO_RS13910 - enolase, at 3,161,237 to 3,162,520 _RS13910 Position (kb) 3160 3161Strain fitness (log2 ratio) -1 0 1at 3159.184 kb on - strand, within HSERO_RS13895at 3159.197 kb on + strand, within HSERO_RS13895at 3159.260 kb on - strand, within HSERO_RS13895at 3159.384 kb on - strand, within HSERO_RS13895at 3159.424 kb on + strand, within HSERO_RS13895at 3160.071 kb on + strandat 3160.581 kb on - strand, within HSERO_RS13900at 3160.731 kb on + strandat 3160.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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3,159,184 - HSERO_RS13895 0.40 -1.3
3,159,197 + HSERO_RS13895 0.41 +0.4
3,159,260 - HSERO_RS13895 0.45 -0.2
3,159,384 - HSERO_RS13895 0.52 +0.3
3,159,424 + HSERO_RS13895 0.55 -0.3
3,160,071 + +0.5
3,160,581 - HSERO_RS13900 0.72 +0.4
3,160,731 + -0.2
3,160,739 - -1.0

Or see this region's nucleotide sequence