Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07710

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHSERO_RS07705 and HSERO_RS07710 are separated by 65 nucleotidesHSERO_RS07710 and HSERO_RS07715 are separated by 114 nucleotides HSERO_RS07705: HSERO_RS07705 - ABC transporter ATP-binding protein, at 1,762,818 to 1,764,299 _RS07705 HSERO_RS07710: HSERO_RS07710 - hypothetical protein, at 1,764,365 to 1,764,667 _RS07710 HSERO_RS07715: HSERO_RS07715 - diguanylate cyclase, at 1,764,782 to 1,766,296 _RS07715 Position (kb) 1764 1765Strain fitness (log2 ratio) -3 -2 -1 0 1at 1763.444 kb on + strand, within HSERO_RS07705at 1763.452 kb on - strand, within HSERO_RS07705at 1763.457 kb on + strand, within HSERO_RS07705at 1763.520 kb on + strand, within HSERO_RS07705at 1763.554 kb on - strand, within HSERO_RS07705at 1763.640 kb on + strand, within HSERO_RS07705at 1763.716 kb on - strand, within HSERO_RS07705at 1763.983 kb on - strand, within HSERO_RS07705at 1764.181 kb on + strandat 1764.184 kb on - strandat 1764.211 kb on - strandat 1764.449 kb on - strand, within HSERO_RS07710at 1764.818 kb on + strandat 1764.905 kb on + strandat 1764.913 kb on - strandat 1764.951 kb on - strandat 1764.983 kb on + strand, within HSERO_RS07715at 1764.991 kb on - strand, within HSERO_RS07715at 1765.147 kb on + strand, within HSERO_RS07715at 1765.365 kb on + strand, within HSERO_RS07715at 1765.406 kb on + strand, within HSERO_RS07715at 1765.417 kb on + strand, within HSERO_RS07715at 1765.475 kb on - strand, within HSERO_RS07715at 1765.475 kb on - strand, within HSERO_RS07715at 1765.497 kb on + strand, within HSERO_RS07715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
remove
1,763,444 + HSERO_RS07705 0.42 +0.8
1,763,452 - HSERO_RS07705 0.43 +0.6
1,763,457 + HSERO_RS07705 0.43 -3.7
1,763,520 + HSERO_RS07705 0.47 +0.5
1,763,554 - HSERO_RS07705 0.50 +0.4
1,763,640 + HSERO_RS07705 0.55 +0.1
1,763,716 - HSERO_RS07705 0.61 -0.4
1,763,983 - HSERO_RS07705 0.79 -1.1
1,764,181 + +0.5
1,764,184 - -0.6
1,764,211 - -0.9
1,764,449 - HSERO_RS07710 0.28 +0.5
1,764,818 + +0.5
1,764,905 + -0.7
1,764,913 - +0.2
1,764,951 - -2.3
1,764,983 + HSERO_RS07715 0.13 +0.2
1,764,991 - HSERO_RS07715 0.14 -1.1
1,765,147 + HSERO_RS07715 0.24 +0.0
1,765,365 + HSERO_RS07715 0.38 +0.4
1,765,406 + HSERO_RS07715 0.41 +0.4
1,765,417 + HSERO_RS07715 0.42 +0.6
1,765,475 - HSERO_RS07715 0.46 -0.4
1,765,475 - HSERO_RS07715 0.46 +0.1
1,765,497 + HSERO_RS07715 0.47 -0.1

Or see this region's nucleotide sequence