Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06655

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06645 and HSERO_RS06650 are separated by 23 nucleotidesHSERO_RS06650 and HSERO_RS06655 overlap by 2 nucleotidesHSERO_RS06655 and HSERO_RS06660 overlap by 11 nucleotides HSERO_RS06645: HSERO_RS06645 - aldehyde dehydrogenase, at 1,510,454 to 1,512,733 _RS06645 HSERO_RS06650: HSERO_RS06650 - MarR family transcriptional regulator, at 1,512,757 to 1,513,197 _RS06650 HSERO_RS06655: HSERO_RS06655 - hypothetical protein, at 1,513,196 to 1,513,426 _RS06655 HSERO_RS06660: HSERO_RS06660 - flavin reductase, at 1,513,416 to 1,514,030 _RS06660 Position (kb) 1513 1514Strain fitness (log2 ratio) -2 -1 0 1 2at 1512.223 kb on + strand, within HSERO_RS06645at 1512.352 kb on + strand, within HSERO_RS06645at 1512.379 kb on + strand, within HSERO_RS06645at 1512.626 kb on + strandat 1512.928 kb on - strand, within HSERO_RS06650at 1512.962 kb on - strand, within HSERO_RS06650at 1513.066 kb on - strand, within HSERO_RS06650at 1513.066 kb on - strand, within HSERO_RS06650at 1513.112 kb on + strand, within HSERO_RS06650at 1513.190 kb on - strandat 1513.250 kb on + strand, within HSERO_RS06655at 1513.308 kb on - strand, within HSERO_RS06655at 1513.436 kb on + strandat 1513.436 kb on + strandat 1513.444 kb on - strandat 1513.624 kb on - strand, within HSERO_RS06660at 1513.694 kb on + strand, within HSERO_RS06660at 1514.071 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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1,512,223 + HSERO_RS06645 0.78 -1.3
1,512,352 + HSERO_RS06645 0.83 -0.1
1,512,379 + HSERO_RS06645 0.84 +0.3
1,512,626 + +0.1
1,512,928 - HSERO_RS06650 0.39 -1.0
1,512,962 - HSERO_RS06650 0.46 -2.3
1,513,066 - HSERO_RS06650 0.70 +1.7
1,513,066 - HSERO_RS06650 0.70 -2.0
1,513,112 + HSERO_RS06650 0.80 -1.7
1,513,190 - -0.8
1,513,250 + HSERO_RS06655 0.23 -0.9
1,513,308 - HSERO_RS06655 0.48 +2.0
1,513,436 + +0.1
1,513,436 + +0.1
1,513,444 - -0.2
1,513,624 - HSERO_RS06660 0.34 -0.9
1,513,694 + HSERO_RS06660 0.45 +0.6
1,514,071 + -0.3

Or see this region's nucleotide sequence