Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06480

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS06475 and HSERO_RS06480 are separated by 257 nucleotidesHSERO_RS06480 and HSERO_RS06485 are separated by 29 nucleotides HSERO_RS06475: HSERO_RS06475 - transcriptional regulator, at 1,462,677 to 1,463,609 _RS06475 HSERO_RS06480: HSERO_RS06480 - hemolysin activation translocator protein, at 1,463,867 to 1,465,612 _RS06480 HSERO_RS06485: HSERO_RS06485 - filamentous hemagglutinin protein, at 1,465,642 to 1,473,618 _RS06485 Position (kb) 1463 1464 1465 1466Strain fitness (log2 ratio) -2 -1 0 1 2at 1462.934 kb on + strand, within HSERO_RS06475at 1462.942 kb on - strand, within HSERO_RS06475at 1463.044 kb on + strand, within HSERO_RS06475at 1463.046 kb on + strand, within HSERO_RS06475at 1463.070 kb on - strand, within HSERO_RS06475at 1463.240 kb on - strand, within HSERO_RS06475at 1463.364 kb on + strand, within HSERO_RS06475at 1463.527 kb on + strandat 1463.535 kb on - strandat 1463.535 kb on - strandat 1463.635 kb on + strandat 1463.840 kb on - strandat 1463.904 kb on + strandat 1463.975 kb on - strandat 1464.050 kb on + strand, within HSERO_RS06480at 1464.098 kb on - strand, within HSERO_RS06480at 1464.103 kb on + strand, within HSERO_RS06480at 1464.111 kb on - strand, within HSERO_RS06480at 1464.174 kb on + strand, within HSERO_RS06480at 1464.324 kb on + strand, within HSERO_RS06480at 1464.329 kb on + strand, within HSERO_RS06480at 1464.614 kb on - strand, within HSERO_RS06480at 1464.850 kb on + strand, within HSERO_RS06480at 1464.934 kb on - strand, within HSERO_RS06480at 1465.033 kb on + strand, within HSERO_RS06480at 1465.074 kb on + strand, within HSERO_RS06480at 1465.162 kb on + strand, within HSERO_RS06480at 1465.390 kb on - strand, within HSERO_RS06480at 1465.511 kb on + strandat 1465.554 kb on - strandat 1465.632 kb on + strandat 1465.693 kb on + strandat 1465.701 kb on - strandat 1465.741 kb on + strandat 1465.892 kb on - strandat 1465.928 kb on + strandat 1465.936 kb on - strandat 1465.936 kb on - strandat 1465.966 kb on + strandat 1465.975 kb on - strandat 1466.050 kb on - strandat 1466.102 kb on + strandat 1466.135 kb on + strandat 1466.140 kb on + strandat 1466.148 kb on - strandat 1466.180 kb on + strandat 1466.202 kb on + strandat 1466.207 kb on + strandat 1466.212 kb on + strandat 1466.276 kb on + strandat 1466.295 kb on + strandat 1466.357 kb on + strandat 1466.510 kb on + strand, within HSERO_RS06485at 1466.556 kb on - strand, within HSERO_RS06485

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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1,462,934 + HSERO_RS06475 0.28 -1.5
1,462,942 - HSERO_RS06475 0.28 -2.1
1,463,044 + HSERO_RS06475 0.39 +0.0
1,463,046 + HSERO_RS06475 0.40 +2.2
1,463,070 - HSERO_RS06475 0.42 +0.5
1,463,240 - HSERO_RS06475 0.60 +0.6
1,463,364 + HSERO_RS06475 0.74 -0.2
1,463,527 + -0.1
1,463,535 - +0.3
1,463,535 - -0.7
1,463,635 + -0.4
1,463,840 - -0.4
1,463,904 + -0.6
1,463,975 - -1.0
1,464,050 + HSERO_RS06480 0.10 -0.4
1,464,098 - HSERO_RS06480 0.13 -1.0
1,464,103 + HSERO_RS06480 0.14 -0.4
1,464,111 - HSERO_RS06480 0.14 -0.8
1,464,174 + HSERO_RS06480 0.18 -0.2
1,464,324 + HSERO_RS06480 0.26 -0.8
1,464,329 + HSERO_RS06480 0.26 -1.8
1,464,614 - HSERO_RS06480 0.43 -0.9
1,464,850 + HSERO_RS06480 0.56 -0.9
1,464,934 - HSERO_RS06480 0.61 -1.2
1,465,033 + HSERO_RS06480 0.67 +0.0
1,465,074 + HSERO_RS06480 0.69 +0.2
1,465,162 + HSERO_RS06480 0.74 +0.0
1,465,390 - HSERO_RS06480 0.87 -0.5
1,465,511 + -0.8
1,465,554 - -0.6
1,465,632 + -0.7
1,465,693 + -0.3
1,465,701 - -0.2
1,465,741 + -0.4
1,465,892 - -0.8
1,465,928 + -1.4
1,465,936 - +0.0
1,465,936 - -0.8
1,465,966 + -0.1
1,465,975 - -1.2
1,466,050 - +0.4
1,466,102 + +0.1
1,466,135 + -1.3
1,466,140 + -0.9
1,466,148 - -0.8
1,466,180 + -0.5
1,466,202 + +0.5
1,466,207 + -0.5
1,466,212 + -0.0
1,466,276 + -0.5
1,466,295 + +0.2
1,466,357 + -0.1
1,466,510 + HSERO_RS06485 0.11 -0.9
1,466,556 - HSERO_RS06485 0.11 -0.1

Or see this region's nucleotide sequence