Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05620

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS05610 and HSERO_RS05615 are separated by 35 nucleotidesHSERO_RS05615 and HSERO_RS05620 are separated by 15 nucleotidesHSERO_RS05620 and HSERO_RS05625 are separated by 191 nucleotides HSERO_RS05610: HSERO_RS05610 - fumarylacetoacetase, at 1,272,874 to 1,274,220 _RS05610 HSERO_RS05615: HSERO_RS05615 - maleylacetoacetate isomerase, at 1,274,256 to 1,274,903 _RS05615 HSERO_RS05620: HSERO_RS05620 - dehydratase, at 1,274,919 to 1,275,374 _RS05620 HSERO_RS05625: HSERO_RS05625 - flagellar hook protein, at 1,275,566 to 1,277,596 _RS05625 Position (kb) 1274 1275 1276Strain fitness (log2 ratio) -1 0 1 2at 1274.897 kb on + strandat 1274.915 kb on - strandat 1274.930 kb on - strandat 1275.185 kb on + strand, within HSERO_RS05620at 1275.348 kb on - strandat 1275.573 kb on + strandat 1275.587 kb on + strandat 1275.663 kb on + strandat 1275.744 kb on + strandat 1275.774 kb on - strandat 1275.898 kb on + strand, within HSERO_RS05625at 1276.095 kb on + strand, within HSERO_RS05625at 1276.103 kb on - strand, within HSERO_RS05625at 1276.103 kb on - strand, within HSERO_RS05625at 1276.117 kb on - strand, within HSERO_RS05625at 1276.218 kb on - strand, within HSERO_RS05625at 1276.366 kb on - strand, within HSERO_RS05625

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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1,274,897 + +0.4
1,274,915 - -0.9
1,274,930 - +0.5
1,275,185 + HSERO_RS05620 0.58 +0.5
1,275,348 - -0.3
1,275,573 + +0.3
1,275,587 + -0.3
1,275,663 + +1.8
1,275,744 + +0.1
1,275,774 - -1.0
1,275,898 + HSERO_RS05625 0.16 +0.5
1,276,095 + HSERO_RS05625 0.26 +0.1
1,276,103 - HSERO_RS05625 0.26 -0.0
1,276,103 - HSERO_RS05625 0.26 +0.5
1,276,117 - HSERO_RS05625 0.27 -0.1
1,276,218 - HSERO_RS05625 0.32 -0.1
1,276,366 - HSERO_RS05625 0.39 +0.3

Or see this region's nucleotide sequence