Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS02170

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS02165 and HSERO_RS02170 are separated by 76 nucleotidesHSERO_RS02170 and HSERO_RS02175 are separated by 214 nucleotides HSERO_RS02165: HSERO_RS02165 - molecular chaperone DnaJ, at 472,546 to 473,649 _RS02165 HSERO_RS02170: HSERO_RS02170 - transcriptional regulator, at 473,726 to 474,601 _RS02170 HSERO_RS02175: HSERO_RS02175 - NmrA family transcriptional regulator, at 474,816 to 475,682 _RS02175 Position (kb) 473 474 475Strain fitness (log2 ratio) -1 0 1at 472.933 kb on + strand, within HSERO_RS02165at 472.995 kb on - strand, within HSERO_RS02165at 473.224 kb on + strand, within HSERO_RS02165at 473.346 kb on - strand, within HSERO_RS02165at 473.473 kb on + strand, within HSERO_RS02165at 473.481 kb on - strand, within HSERO_RS02165at 473.530 kb on - strand, within HSERO_RS02165at 473.609 kb on + strandat 473.609 kb on + strandat 473.617 kb on - strandat 473.619 kb on + strandat 473.785 kb on + strandat 473.785 kb on + strandat 474.041 kb on - strand, within HSERO_RS02170at 474.218 kb on + strand, within HSERO_RS02170at 474.339 kb on + strand, within HSERO_RS02170at 474.603 kb on - strandat 474.898 kb on + strandat 474.993 kb on - strand, within HSERO_RS02175at 475.173 kb on - strand, within HSERO_RS02175at 475.264 kb on - strand, within HSERO_RS02175

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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472,933 + HSERO_RS02165 0.35 +0.2
472,995 - HSERO_RS02165 0.41 -0.4
473,224 + HSERO_RS02165 0.61 +1.4
473,346 - HSERO_RS02165 0.72 -0.3
473,473 + HSERO_RS02165 0.84 -1.4
473,481 - HSERO_RS02165 0.85 +0.0
473,530 - HSERO_RS02165 0.89 -0.3
473,609 + -0.8
473,609 + +1.3
473,617 - +0.0
473,619 + +0.6
473,785 + +0.2
473,785 + -1.5
474,041 - HSERO_RS02170 0.36 +0.8
474,218 + HSERO_RS02170 0.56 +0.4
474,339 + HSERO_RS02170 0.70 -0.1
474,603 - +0.4
474,898 + -0.5
474,993 - HSERO_RS02175 0.20 -0.6
475,173 - HSERO_RS02175 0.41 +0.3
475,264 - HSERO_RS02175 0.52 +0.2

Or see this region's nucleotide sequence