Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS01835

Experiment: Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS01830 and HSERO_RS01835 are separated by 86 nucleotidesHSERO_RS01835 and HSERO_RS01840 are separated by 356 nucleotidesHSERO_RS01840 and HSERO_RS01845 overlap by 2 nucleotides HSERO_RS01830: HSERO_RS01830 - prolyl-tRNA synthetase, at 402,729 to 404,456 _RS01830 HSERO_RS01835: HSERO_RS01835 - hypothetical protein, at 404,543 to 404,956 _RS01835 HSERO_RS01840: HSERO_RS01840 - hypothetical protein, at 405,313 to 405,543 _RS01840 HSERO_RS01845: HSERO_RS01845 - hypothetical protein, at 405,542 to 405,844 _RS01845 Position (kb) 404 405Strain fitness (log2 ratio) -1 0 1 2at 404.746 kb on + strand, within HSERO_RS01835at 404.882 kb on - strand, within HSERO_RS01835at 405.068 kb on - strandat 405.106 kb on - strandat 405.228 kb on - strandat 405.316 kb on + strandat 405.324 kb on - strandat 405.713 kb on + strand, within HSERO_RS01845at 405.735 kb on - strand, within HSERO_RS01845

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Per-strain Table

Position Strand Gene LocusTag Fraction Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB
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404,746 + HSERO_RS01835 0.49 -0.2
404,882 - HSERO_RS01835 0.82 +2.2
405,068 - -0.6
405,106 - -0.1
405,228 - -0.9
405,316 + -0.4
405,324 - -0.9
405,713 + HSERO_RS01845 0.56 +0.2
405,735 - HSERO_RS01845 0.64 -0.3

Or see this region's nucleotide sequence