Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09330 and PGA1_c09340 are separated by 202 nucleotides PGA1_c09340 and PGA1_c09350 are separated by 415 nucleotides PGA1_c09350 and PGA1_c09360 are separated by 214 nucleotides PGA1_c09360 and PGA1_c09370 are separated by 214 nucleotides PGA1_c09370 and PGA1_c09380 are separated by 67 nucleotides
PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783
_c09330
PGA1_c09340: PGA1_c09340 - putative transcriptional regulator, AsnC family, at 953,986 to 954,225
_c09340
PGA1_c09350: PGA1_c09350 - aminotransferase class-III, at 954,641 to 955,993
_c09350
PGA1_c09360: PGA1_c09360 - tRNA-Gly, at 956,208 to 956,282
_c09360
PGA1_c09370: PGA1_c09370 - tRNA-Gly, at 956,497 to 956,571
_c09370
PGA1_c09380: PGA1_c09380 - putative type 2 restriction enzyme naeI, at 956,639 to 957,550
_c09380
Position (kb) 954
955
956 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 953.820 kb on - strand at 953.837 kb on + strand at 953.973 kb on + strand at 953.979 kb on - strand at 953.979 kb on - strand at 953.981 kb on - strand at 953.981 kb on - strand at 953.994 kb on - strand at 954.030 kb on - strand, within PGA1_c09340 at 954.040 kb on - strand, within PGA1_c09340 at 954.041 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.081 kb on + strand, within PGA1_c09340 at 954.087 kb on + strand, within PGA1_c09340 at 954.165 kb on + strand, within PGA1_c09340 at 954.173 kb on - strand, within PGA1_c09340 at 954.190 kb on - strand, within PGA1_c09340 at 954.198 kb on + strand, within PGA1_c09340 at 954.206 kb on - strand at 954.209 kb on + strand at 954.219 kb on + strand at 954.235 kb on - strand at 954.237 kb on - strand at 954.265 kb on + strand at 954.265 kb on + strand at 954.273 kb on - strand at 954.286 kb on - strand at 954.316 kb on - strand at 954.350 kb on - strand at 954.355 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.396 kb on + strand at 954.399 kb on - strand at 954.456 kb on - strand at 954.466 kb on - strand at 954.467 kb on - strand at 954.525 kb on + strand at 954.525 kb on + strand at 954.536 kb on - strand at 954.608 kb on + strand at 954.616 kb on + strand at 954.616 kb on + strand at 954.663 kb on + strand at 954.663 kb on + strand at 954.681 kb on - strand at 954.707 kb on + strand at 954.715 kb on - strand at 954.715 kb on - strand at 954.717 kb on + strand at 954.771 kb on - strand at 954.796 kb on - strand, within PGA1_c09350 at 954.981 kb on - strand, within PGA1_c09350 at 954.985 kb on + strand, within PGA1_c09350 at 955.062 kb on + strand, within PGA1_c09350 at 955.161 kb on + strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.261 kb on - strand, within PGA1_c09350 at 955.263 kb on + strand, within PGA1_c09350 at 955.263 kb on + strand, within PGA1_c09350 at 955.268 kb on + strand, within PGA1_c09350 at 955.276 kb on - strand, within PGA1_c09350 at 955.390 kb on - strand, within PGA1_c09350 at 955.398 kb on - strand, within PGA1_c09350 at 955.415 kb on + strand, within PGA1_c09350 at 955.457 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.502 kb on + strand, within PGA1_c09350 at 955.587 kb on - strand, within PGA1_c09350 at 955.666 kb on - strand, within PGA1_c09350 at 955.703 kb on + strand, within PGA1_c09350 at 955.783 kb on + strand, within PGA1_c09350 at 955.845 kb on + strand, within PGA1_c09350 at 955.860 kb on + strand at 955.863 kb on - strand at 955.873 kb on - strand at 955.890 kb on - strand at 955.905 kb on + strand at 955.923 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.956 kb on - strand at 955.999 kb on + strand at 956.002 kb on - strand at 956.065 kb on - strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.143 kb on - strand at 956.143 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.332 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.469 kb on + strand at 956.493 kb on - strand at 956.620 kb on - strand at 956.701 kb on + strand at 956.763 kb on - strand, within PGA1_c09380 at 956.763 kb on - strand, within PGA1_c09380 at 956.768 kb on + strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.824 kb on + strand, within PGA1_c09380 at 956.891 kb on - strand, within PGA1_c09380 at 956.918 kb on + strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.928 kb on + strand, within PGA1_c09380 at 956.931 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.971 kb on - strand, within PGA1_c09380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 953,820 - +1.2 953,837 + -0.6 953,973 + -0.9 953,979 - -0.3 953,979 - +2.0 953,981 - +1.0 953,981 - -0.0 953,994 - +0.4 954,030 - PGA1_c09340 0.18 -1.9 954,040 - PGA1_c09340 0.23 -1.7 954,041 + PGA1_c09340 0.23 +0.6 954,050 + PGA1_c09340 0.27 -0.3 954,050 + PGA1_c09340 0.27 -1.0 954,050 + PGA1_c09340 0.27 -1.7 954,058 - PGA1_c09340 0.30 -0.4 954,058 - PGA1_c09340 0.30 +0.9 954,081 + PGA1_c09340 0.40 -0.3 954,087 + PGA1_c09340 0.42 +0.0 954,165 + PGA1_c09340 0.75 -1.5 954,173 - PGA1_c09340 0.78 +0.8 954,190 - PGA1_c09340 0.85 +1.4 954,198 + PGA1_c09340 0.88 +0.5 954,206 - -1.5 954,209 + -1.1 954,219 + -0.5 954,235 - +0.2 954,237 - +0.9 954,265 + -0.6 954,265 + +1.1 954,273 - -0.2 954,286 - +1.2 954,316 - +1.0 954,350 - +0.1 954,355 + -0.7 954,391 + -0.5 954,391 + -0.3 954,391 + +1.2 954,391 + -0.6 954,391 + -0.2 954,396 + +0.2 954,399 - +0.2 954,456 - -0.7 954,466 - +0.8 954,467 - +0.5 954,525 + -0.4 954,525 + -1.9 954,536 - +0.4 954,608 + +0.4 954,616 + +0.2 954,616 + +0.1 954,663 + +0.9 954,663 + -1.5 954,681 - -1.4 954,707 + +1.1 954,715 - +0.2 954,715 - +0.9 954,717 + +0.0 954,771 - -0.8 954,796 - PGA1_c09350 0.11 +0.4 954,981 - PGA1_c09350 0.25 +1.7 954,985 + PGA1_c09350 0.25 -0.5 955,062 + PGA1_c09350 0.31 +0.8 955,161 + PGA1_c09350 0.38 -0.8 955,169 - PGA1_c09350 0.39 -0.5 955,169 - PGA1_c09350 0.39 +0.1 955,169 - PGA1_c09350 0.39 -0.4 955,261 - PGA1_c09350 0.46 +0.9 955,263 + PGA1_c09350 0.46 -0.8 955,263 + PGA1_c09350 0.46 +1.0 955,268 + PGA1_c09350 0.46 +0.1 955,276 - PGA1_c09350 0.47 +1.4 955,390 - PGA1_c09350 0.55 -0.1 955,398 - PGA1_c09350 0.56 +0.4 955,415 + PGA1_c09350 0.57 -0.2 955,457 + PGA1_c09350 0.60 -0.7 955,470 + PGA1_c09350 0.61 +0.1 955,470 + PGA1_c09350 0.61 +0.9 955,470 + PGA1_c09350 0.61 +0.6 955,470 + PGA1_c09350 0.61 -0.5 955,470 + PGA1_c09350 0.61 +0.6 955,470 + PGA1_c09350 0.61 +0.7 955,470 + PGA1_c09350 0.61 -0.3 955,478 - PGA1_c09350 0.62 +0.4 955,478 - PGA1_c09350 0.62 -1.1 955,478 - PGA1_c09350 0.62 +3.1 955,478 - PGA1_c09350 0.62 +1.4 955,502 + PGA1_c09350 0.64 +0.6 955,587 - PGA1_c09350 0.70 +0.7 955,666 - PGA1_c09350 0.76 +1.0 955,703 + PGA1_c09350 0.78 +0.6 955,783 + PGA1_c09350 0.84 -0.6 955,845 + PGA1_c09350 0.89 +1.5 955,860 + -0.2 955,863 - +0.3 955,873 - -0.1 955,890 - -0.0 955,905 + +1.1 955,923 + +0.1 955,933 + -0.8 955,933 + +0.5 955,933 + -2.6 955,938 + +2.1 955,938 + +0.6 955,938 + +0.4 955,938 + +0.9 955,938 + +0.3 955,938 + +1.0 955,941 - +0.1 955,941 - +1.1 955,941 - +0.4 955,941 - -0.4 955,946 - -0.7 955,946 - -0.0 955,946 - -1.5 955,946 - -0.5 955,946 - -0.5 955,946 - -0.5 955,946 - +0.3 955,956 - -0.5 955,999 + +0.3 956,002 - +1.9 956,065 - +0.2 956,135 + -1.5 956,135 + +0.5 956,135 + -0.4 956,143 - +1.0 956,143 - -1.1 956,146 - +0.6 956,146 - +0.0 956,146 - +0.5 956,146 - -2.0 956,332 - -2.1 956,384 - -0.3 956,384 - -0.7 956,384 - -0.2 956,469 + +0.0 956,493 - +0.0 956,620 - -0.0 956,701 + +2.3 956,763 - PGA1_c09380 0.14 +2.6 956,763 - PGA1_c09380 0.14 +0.9 956,768 + PGA1_c09380 0.14 -1.7 956,776 - PGA1_c09380 0.15 +0.2 956,776 - PGA1_c09380 0.15 -0.6 956,776 - PGA1_c09380 0.15 -0.2 956,824 + PGA1_c09380 0.20 +0.6 956,891 - PGA1_c09380 0.28 -0.7 956,918 + PGA1_c09380 0.31 -1.0 956,926 - PGA1_c09380 0.31 +0.6 956,926 - PGA1_c09380 0.31 +0.5 956,928 + PGA1_c09380 0.32 -0.3 956,931 - PGA1_c09380 0.32 +1.2 956,936 - PGA1_c09380 0.33 -1.9 956,936 - PGA1_c09380 0.33 -2.0 956,936 - PGA1_c09380 0.33 -1.9 956,971 - PGA1_c09380 0.36 -1.4
Or see this region's nucleotide sequence