Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09220 and PGA1_c09230 are separated by 238 nucleotides PGA1_c09230 and PGA1_c09240 overlap by 4 nucleotides PGA1_c09240 and PGA1_c09250 are separated by 34 nucleotides
PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666
_c09220
PGA1_c09230: PGA1_c09230 - phosphoribosyl-ATP pyrophosphatase HisE, at 946,905 to 947,222
_c09230
PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980
_c09240
PGA1_c09250: PGA1_c09250 - Protein of unknown function (DUF2867)., at 948,015 to 948,497
_c09250
Position (kb) 946
947
948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 946.013 kb on - strand at 946.022 kb on + strand at 946.030 kb on - strand at 946.085 kb on - strand at 946.124 kb on + strand at 946.204 kb on - strand at 946.266 kb on - strand, within PGA1_c09220 at 946.269 kb on + strand, within PGA1_c09220 at 946.329 kb on - strand, within PGA1_c09220 at 946.371 kb on - strand, within PGA1_c09220 at 946.382 kb on + strand, within PGA1_c09220 at 946.451 kb on - strand, within PGA1_c09220 at 946.483 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.528 kb on + strand, within PGA1_c09220 at 946.546 kb on + strand, within PGA1_c09220 at 946.567 kb on - strand, within PGA1_c09220 at 946.616 kb on + strand, within PGA1_c09220 at 946.878 kb on + strand at 948.010 kb on + strand at 948.020 kb on - strand at 948.054 kb on - strand at 948.054 kb on - strand at 948.093 kb on - strand, within PGA1_c09250 at 948.115 kb on + strand, within PGA1_c09250 at 948.160 kb on + strand, within PGA1_c09250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 946,013 - +1.5 946,022 + +0.7 946,030 - -1.2 946,085 - -1.1 946,124 + -1.1 946,204 - +1.7 946,266 - PGA1_c09220 0.15 -0.1 946,269 + PGA1_c09220 0.15 +1.4 946,329 - PGA1_c09220 0.28 -0.1 946,371 - PGA1_c09220 0.37 -0.3 946,382 + PGA1_c09220 0.39 -1.1 946,451 - PGA1_c09220 0.54 -0.0 946,483 + PGA1_c09220 0.61 -1.7 946,518 + PGA1_c09220 0.68 -0.4 946,518 + PGA1_c09220 0.68 +1.5 946,518 + PGA1_c09220 0.68 -3.0 946,528 + PGA1_c09220 0.70 -0.1 946,546 + PGA1_c09220 0.74 +0.1 946,567 - PGA1_c09220 0.79 -0.7 946,616 + PGA1_c09220 0.89 -0.4 946,878 + +1.7 948,010 + -0.8 948,020 - +2.3 948,054 - -0.7 948,054 - +0.6 948,093 - PGA1_c09250 0.16 -2.0 948,115 + PGA1_c09250 0.21 -0.2 948,160 + PGA1_c09250 0.30 -0.5
Or see this region's nucleotide sequence