Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09180 and PGA1_c09200 are separated by 428 nucleotides PGA1_c09200 and PGA1_c09210 are separated by 198 nucleotides
PGA1_c09180: PGA1_c09180 - Protein of unknown function (DUF2478)., at 943,309 to 943,836
_c09180
PGA1_c09200: PGA1_c09200 - putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 944,265 to 945,041
_c09200
PGA1_c09210: PGA1_c09210 - hypothetical protein, at 945,240 to 945,803
_c09210
Position (kb) 944
945
946 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 943.317 kb on + strand at 943.325 kb on - strand at 943.325 kb on - strand at 943.388 kb on - strand, within PGA1_c09180 at 943.519 kb on - strand, within PGA1_c09180 at 943.559 kb on + strand, within PGA1_c09180 at 943.569 kb on + strand, within PGA1_c09180 at 943.593 kb on - strand, within PGA1_c09180 at 943.723 kb on + strand, within PGA1_c09180 at 943.788 kb on + strand at 943.794 kb on - strand at 944.043 kb on - strand at 944.216 kb on + strand at 944.235 kb on + strand at 944.235 kb on + strand at 944.329 kb on + strand at 944.337 kb on - strand at 944.337 kb on - strand at 944.377 kb on - strand, within PGA1_c09200 at 944.462 kb on - strand, within PGA1_c09200 at 944.537 kb on - strand, within PGA1_c09200 at 944.546 kb on + strand, within PGA1_c09200 at 944.554 kb on - strand, within PGA1_c09200 at 944.619 kb on - strand, within PGA1_c09200 at 944.703 kb on + strand, within PGA1_c09200 at 944.711 kb on - strand, within PGA1_c09200 at 944.711 kb on - strand, within PGA1_c09200 at 944.825 kb on + strand, within PGA1_c09200 at 944.851 kb on + strand, within PGA1_c09200 at 944.859 kb on + strand, within PGA1_c09200 at 944.897 kb on - strand, within PGA1_c09200 at 944.902 kb on - strand, within PGA1_c09200 at 944.910 kb on - strand, within PGA1_c09200 at 944.911 kb on + strand, within PGA1_c09200 at 944.919 kb on - strand, within PGA1_c09200 at 944.924 kb on - strand, within PGA1_c09200 at 944.985 kb on - strand at 945.026 kb on + strand at 945.045 kb on + strand at 945.062 kb on - strand at 945.062 kb on - strand at 945.062 kb on - strand at 945.221 kb on - strand at 945.292 kb on + strand at 945.298 kb on - strand, within PGA1_c09210 at 945.310 kb on - strand, within PGA1_c09210 at 945.320 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.339 kb on + strand, within PGA1_c09210 at 945.347 kb on + strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.347 kb on - strand, within PGA1_c09210 at 945.354 kb on - strand, within PGA1_c09210 at 945.368 kb on - strand, within PGA1_c09210 at 945.549 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.649 kb on - strand, within PGA1_c09210 at 945.701 kb on - strand, within PGA1_c09210 at 945.844 kb on - strand at 945.864 kb on + strand at 945.876 kb on + strand at 945.884 kb on - strand at 946.013 kb on - strand at 946.022 kb on + strand at 946.030 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 943,317 + -0.3 943,325 - -2.1 943,325 - +1.4 943,388 - PGA1_c09180 0.15 -1.2 943,519 - PGA1_c09180 0.40 -1.1 943,559 + PGA1_c09180 0.47 +1.0 943,569 + PGA1_c09180 0.49 +1.1 943,593 - PGA1_c09180 0.54 -0.0 943,723 + PGA1_c09180 0.78 +0.5 943,788 + -0.9 943,794 - +0.7 944,043 - +0.8 944,216 + +1.3 944,235 + -0.2 944,235 + -0.1 944,329 + -0.2 944,337 - +1.6 944,337 - +0.0 944,377 - PGA1_c09200 0.14 +1.0 944,462 - PGA1_c09200 0.25 +0.3 944,537 - PGA1_c09200 0.35 +1.7 944,546 + PGA1_c09200 0.36 +0.8 944,554 - PGA1_c09200 0.37 -0.6 944,619 - PGA1_c09200 0.46 +2.0 944,703 + PGA1_c09200 0.56 +0.8 944,711 - PGA1_c09200 0.57 +0.5 944,711 - PGA1_c09200 0.57 +1.2 944,825 + PGA1_c09200 0.72 -0.1 944,851 + PGA1_c09200 0.75 -1.1 944,859 + PGA1_c09200 0.76 +0.8 944,897 - PGA1_c09200 0.81 -1.7 944,902 - PGA1_c09200 0.82 +1.0 944,910 - PGA1_c09200 0.83 +2.5 944,911 + PGA1_c09200 0.83 -0.1 944,919 - PGA1_c09200 0.84 +0.5 944,924 - PGA1_c09200 0.85 -0.3 944,985 - +0.0 945,026 + -0.7 945,045 + +1.0 945,062 - -1.3 945,062 - +0.5 945,062 - +1.1 945,221 - +1.0 945,292 + -0.7 945,298 - PGA1_c09210 0.10 +1.4 945,310 - PGA1_c09210 0.12 +0.1 945,320 + PGA1_c09210 0.14 +0.5 945,339 + PGA1_c09210 0.18 -0.1 945,339 + PGA1_c09210 0.18 +1.1 945,339 + PGA1_c09210 0.18 -1.0 945,347 + PGA1_c09210 0.19 -1.5 945,347 - PGA1_c09210 0.19 +2.8 945,347 - PGA1_c09210 0.19 -1.2 945,354 - PGA1_c09210 0.20 +0.5 945,368 - PGA1_c09210 0.23 +0.7 945,549 - PGA1_c09210 0.55 +0.5 945,649 - PGA1_c09210 0.73 +0.6 945,649 - PGA1_c09210 0.73 +0.6 945,701 - PGA1_c09210 0.82 -1.3 945,844 - -1.5 945,864 + +0.1 945,876 + +0.8 945,884 - -0.6 946,013 - +1.5 946,022 + +0.7 946,030 - -1.2
Or see this region's nucleotide sequence