Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05730

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05710 and PGA1_c05720 are separated by 193 nucleotidesPGA1_c05720 and PGA1_c05730 are separated by 216 nucleotidesPGA1_c05730 and PGA1_c05740 are separated by 228 nucleotides PGA1_c05710: PGA1_c05710 - isoleucyl-tRNA synthetase IleS, at 584,015 to 586,945 _c05710 PGA1_c05720: PGA1_c05720 - hypothetical protein, at 587,139 to 587,483 _c05720 PGA1_c05730: PGA1_c05730 - putative methylated-DNA--protein-cysteine methyltransferase, at 587,700 to 588,188 _c05730 PGA1_c05740: PGA1_c05740 - phosphatidylcholine synthase Pcs, at 588,417 to 589,112 _c05740 Position (kb) 587 588 589Strain fitness (log2 ratio) -2 -1 0 1at 587.103 kb on + strandat 587.108 kb on + strandat 587.231 kb on + strand, within PGA1_c05720at 587.246 kb on + strand, within PGA1_c05720at 587.259 kb on - strand, within PGA1_c05720at 587.368 kb on + strand, within PGA1_c05720at 587.384 kb on - strand, within PGA1_c05720at 587.415 kb on + strand, within PGA1_c05720at 587.423 kb on - strand, within PGA1_c05720at 587.478 kb on - strandat 587.548 kb on + strandat 587.550 kb on + strandat 587.556 kb on - strandat 587.556 kb on - strandat 587.556 kb on - strandat 587.556 kb on - strandat 587.575 kb on + strandat 587.637 kb on + strandat 587.645 kb on - strandat 587.645 kb on - strandat 587.666 kb on - strandat 587.671 kb on - strandat 587.690 kb on + strandat 587.773 kb on - strand, within PGA1_c05730at 587.783 kb on - strand, within PGA1_c05730at 588.049 kb on - strand, within PGA1_c05730at 588.079 kb on + strand, within PGA1_c05730at 588.203 kb on + strandat 588.216 kb on + strandat 588.224 kb on - strandat 588.234 kb on - strandat 588.391 kb on + strandat 588.423 kb on - strandat 588.485 kb on - strandat 589.098 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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587,103 + -2.3
587,108 + -0.4
587,231 + PGA1_c05720 0.27 -1.2
587,246 + PGA1_c05720 0.31 -0.0
587,259 - PGA1_c05720 0.35 -1.0
587,368 + PGA1_c05720 0.66 -1.2
587,384 - PGA1_c05720 0.71 +0.7
587,415 + PGA1_c05720 0.80 +0.3
587,423 - PGA1_c05720 0.82 -0.7
587,478 - -0.4
587,548 + +1.2
587,550 + -0.9
587,556 - +0.5
587,556 - -0.1
587,556 - -1.4
587,556 - -1.0
587,575 + -0.3
587,637 + +0.3
587,645 - +0.1
587,645 - +0.5
587,666 - +0.2
587,671 - -1.8
587,690 + -0.6
587,773 - PGA1_c05730 0.15 -0.5
587,783 - PGA1_c05730 0.17 -0.8
588,049 - PGA1_c05730 0.71 -0.9
588,079 + PGA1_c05730 0.78 +0.6
588,203 + -0.5
588,216 + +1.1
588,224 - -0.3
588,234 - -1.1
588,391 + -0.1
588,423 - +0.2
588,485 - -0.4
589,098 + -0.4

Or see this region's nucleotide sequence