Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05410

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05400 and PGA1_c05410 overlap by 1 nucleotidesPGA1_c05410 and PGA1_c05420 are separated by 172 nucleotides PGA1_c05400: PGA1_c05400 - putative glycosyl transferase, family 2, at 547,603 to 548,586 _c05400 PGA1_c05410: PGA1_c05410 - hypothetical protein, at 548,586 to 549,695 _c05410 PGA1_c05420: PGA1_c05420 - glucokinase (EC 2.7.1.2) (from data), at 549,868 to 550,818 _c05420 Position (kb) 548 549 550Strain fitness (log2 ratio) -2 -1 0 1 2at 547.675 kb on - strandat 547.695 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.826 kb on + strand, within PGA1_c05400at 547.826 kb on + strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.856 kb on + strand, within PGA1_c05400at 547.882 kb on + strand, within PGA1_c05400at 547.914 kb on - strand, within PGA1_c05400at 547.925 kb on - strand, within PGA1_c05400at 548.039 kb on - strand, within PGA1_c05400at 548.077 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.106 kb on - strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.234 kb on + strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.332 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.365 kb on - strand, within PGA1_c05400at 548.380 kb on - strand, within PGA1_c05400at 548.464 kb on + strand, within PGA1_c05400at 548.515 kb on - strandat 548.547 kb on - strandat 548.567 kb on + strandat 548.567 kb on + strandat 548.648 kb on + strandat 548.671 kb on + strandat 548.778 kb on + strand, within PGA1_c05410at 548.779 kb on + strand, within PGA1_c05410at 548.787 kb on - strand, within PGA1_c05410at 548.836 kb on - strand, within PGA1_c05410at 548.836 kb on - strand, within PGA1_c05410at 548.876 kb on + strand, within PGA1_c05410at 548.944 kb on - strand, within PGA1_c05410at 548.973 kb on - strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.069 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.113 kb on - strand, within PGA1_c05410at 549.170 kb on + strand, within PGA1_c05410at 549.185 kb on + strand, within PGA1_c05410at 549.212 kb on + strand, within PGA1_c05410at 549.216 kb on + strand, within PGA1_c05410at 549.218 kb on + strand, within PGA1_c05410at 549.224 kb on - strand, within PGA1_c05410at 549.291 kb on - strand, within PGA1_c05410at 549.333 kb on + strand, within PGA1_c05410at 549.336 kb on - strand, within PGA1_c05410at 549.341 kb on - strand, within PGA1_c05410at 549.351 kb on - strand, within PGA1_c05410at 549.439 kb on - strand, within PGA1_c05410at 549.444 kb on + strand, within PGA1_c05410at 549.464 kb on - strand, within PGA1_c05410at 549.469 kb on - strand, within PGA1_c05410at 549.543 kb on - strand, within PGA1_c05410at 549.584 kb on - strand, within PGA1_c05410at 549.590 kb on - strandat 549.648 kb on + strandat 549.654 kb on + strandat 549.656 kb on - strandat 549.659 kb on + strandat 549.659 kb on + strandat 549.659 kb on + strandat 549.659 kb on + strandat 549.667 kb on - strandat 549.688 kb on - strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.714 kb on + strandat 549.722 kb on - strandat 549.722 kb on - strandat 549.724 kb on + strandat 549.756 kb on - strandat 549.763 kb on - strandat 549.832 kb on - strandat 550.121 kb on - strand, within PGA1_c05420at 550.126 kb on - strand, within PGA1_c05420at 550.235 kb on - strand, within PGA1_c05420at 550.361 kb on + strand, within PGA1_c05420at 550.677 kb on - strand, within PGA1_c05420

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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547,675 - +2.3
547,695 - -0.1
547,700 - -1.1
547,700 - +0.5
547,700 - -0.2
547,826 + PGA1_c05400 0.23 -0.1
547,826 + PGA1_c05400 0.23 -0.3
547,834 - PGA1_c05400 0.23 +0.4
547,834 - PGA1_c05400 0.23 +1.0
547,856 + PGA1_c05400 0.26 -0.1
547,882 + PGA1_c05400 0.28 +1.0
547,914 - PGA1_c05400 0.32 +1.0
547,925 - PGA1_c05400 0.33 -1.0
548,039 - PGA1_c05400 0.44 +0.8
548,077 + PGA1_c05400 0.48 -0.5
548,079 + PGA1_c05400 0.48 +0.4
548,079 + PGA1_c05400 0.48 +0.9
548,085 - PGA1_c05400 0.49 -0.9
548,085 - PGA1_c05400 0.49 -0.5
548,087 - PGA1_c05400 0.49 +0.4
548,087 - PGA1_c05400 0.49 -1.1
548,106 - PGA1_c05400 0.51 +1.3
548,119 + PGA1_c05400 0.52 +0.5
548,119 + PGA1_c05400 0.52 +0.7
548,234 + PGA1_c05400 0.64 -0.7
548,242 - PGA1_c05400 0.65 +0.7
548,242 - PGA1_c05400 0.65 +0.2
548,242 - PGA1_c05400 0.65 -1.4
548,242 - PGA1_c05400 0.65 +0.8
548,242 - PGA1_c05400 0.65 +0.8
548,329 + PGA1_c05400 0.74 +0.5
548,329 + PGA1_c05400 0.74 +1.2
548,332 - PGA1_c05400 0.74 +0.6
548,337 - PGA1_c05400 0.75 +0.5
548,337 - PGA1_c05400 0.75 +1.4
548,357 + PGA1_c05400 0.77 +1.2
548,357 + PGA1_c05400 0.77 -0.2
548,365 - PGA1_c05400 0.77 +0.0
548,380 - PGA1_c05400 0.79 -1.5
548,464 + PGA1_c05400 0.88 -0.3
548,515 - +1.7
548,547 - +0.3
548,567 + -0.2
548,567 + +0.2
548,648 + +0.1
548,671 + +0.3
548,778 + PGA1_c05410 0.17 +0.0
548,779 + PGA1_c05410 0.17 +0.4
548,787 - PGA1_c05410 0.18 +0.1
548,836 - PGA1_c05410 0.23 -0.1
548,836 - PGA1_c05410 0.23 -1.7
548,876 + PGA1_c05410 0.26 +1.3
548,944 - PGA1_c05410 0.32 +1.4
548,973 - PGA1_c05410 0.35 -0.3
548,989 + PGA1_c05410 0.36 -1.2
548,989 + PGA1_c05410 0.36 +0.0
549,059 - PGA1_c05410 0.43 +0.1
549,059 - PGA1_c05410 0.43 +0.3
549,069 - PGA1_c05410 0.44 -0.2
549,108 - PGA1_c05410 0.47 +0.2
549,108 - PGA1_c05410 0.47 +0.3
549,108 - PGA1_c05410 0.47 -0.3
549,113 - PGA1_c05410 0.47 -0.0
549,170 + PGA1_c05410 0.53 -1.2
549,185 + PGA1_c05410 0.54 -0.2
549,212 + PGA1_c05410 0.56 +1.2
549,216 + PGA1_c05410 0.57 +0.1
549,218 + PGA1_c05410 0.57 +1.5
549,224 - PGA1_c05410 0.57 -0.4
549,291 - PGA1_c05410 0.64 -0.1
549,333 + PGA1_c05410 0.67 +1.4
549,336 - PGA1_c05410 0.68 +0.3
549,341 - PGA1_c05410 0.68 +0.4
549,351 - PGA1_c05410 0.69 -2.2
549,439 - PGA1_c05410 0.77 +0.2
549,444 + PGA1_c05410 0.77 -2.0
549,464 - PGA1_c05410 0.79 +0.6
549,469 - PGA1_c05410 0.80 +0.1
549,543 - PGA1_c05410 0.86 -0.5
549,584 - PGA1_c05410 0.90 -0.2
549,590 - -1.0
549,648 + -1.0
549,654 + -1.0
549,656 - -0.4
549,659 + +0.8
549,659 + +1.3
549,659 + -0.5
549,659 + -0.7
549,667 - +1.4
549,688 - -0.4
549,714 + -0.0
549,714 + +0.3
549,714 + +0.5
549,714 + -0.3
549,714 + +0.8
549,714 + +0.8
549,722 - +0.7
549,722 - -1.0
549,724 + +0.0
549,756 - -2.5
549,763 - -0.6
549,832 - -0.3
550,121 - PGA1_c05420 0.27 +1.5
550,126 - PGA1_c05420 0.27 +0.1
550,235 - PGA1_c05420 0.39 -0.0
550,361 + PGA1_c05420 0.52 +0.3
550,677 - PGA1_c05420 0.85 +1.0

Or see this region's nucleotide sequence