Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04960 and PGA1_c04970 are separated by 58 nucleotides PGA1_c04970 and PGA1_c04980 are separated by 268 nucleotides PGA1_c04980 and PGA1_c04990 overlap by 11 nucleotides
PGA1_c04960: PGA1_c04960 - putative non-specific ribonucleoside hydrolase, at 487,534 to 488,454
_c04960
PGA1_c04970: PGA1_c04970 - hypothetical protein, at 488,513 to 488,812
_c04970
PGA1_c04980: PGA1_c04980 - putative transposase, at 489,081 to 489,872
_c04980
PGA1_c04990: PGA1_c04990 - transposase, at 489,862 to 491,391
_c04990
Position (kb) 489
490 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 488.083 kb on - strand, within PGA1_c04960 at 488.096 kb on + strand, within PGA1_c04960 at 488.096 kb on + strand, within PGA1_c04960 at 488.096 kb on + strand, within PGA1_c04960 at 488.096 kb on + strand, within PGA1_c04960 at 488.096 kb on + strand, within PGA1_c04960 at 488.096 kb on + strand, within PGA1_c04960 at 488.104 kb on - strand, within PGA1_c04960 at 488.104 kb on - strand, within PGA1_c04960 at 488.115 kb on - strand, within PGA1_c04960 at 488.126 kb on - strand, within PGA1_c04960 at 488.146 kb on + strand, within PGA1_c04960 at 488.159 kb on + strand, within PGA1_c04960 at 488.164 kb on + strand, within PGA1_c04960 at 488.167 kb on - strand, within PGA1_c04960 at 488.177 kb on - strand, within PGA1_c04960 at 488.284 kb on + strand, within PGA1_c04960 at 488.286 kb on + strand, within PGA1_c04960 at 488.329 kb on + strand, within PGA1_c04960 at 488.332 kb on - strand, within PGA1_c04960 at 488.337 kb on - strand, within PGA1_c04960 at 488.337 kb on - strand, within PGA1_c04960 at 488.366 kb on + strand at 488.448 kb on + strand at 488.448 kb on + strand at 488.448 kb on + strand at 488.448 kb on + strand at 488.456 kb on - strand at 488.472 kb on + strand at 488.501 kb on - strand at 488.558 kb on - strand, within PGA1_c04970 at 488.610 kb on - strand, within PGA1_c04970 at 488.641 kb on - strand, within PGA1_c04970 at 488.646 kb on - strand, within PGA1_c04970 at 488.650 kb on + strand, within PGA1_c04970 at 488.659 kb on - strand, within PGA1_c04970 at 488.659 kb on - strand, within PGA1_c04970 at 488.714 kb on - strand, within PGA1_c04970 at 488.738 kb on + strand, within PGA1_c04970 at 488.754 kb on + strand, within PGA1_c04970 at 488.754 kb on + strand, within PGA1_c04970 at 488.759 kb on + strand, within PGA1_c04970 at 488.764 kb on + strand, within PGA1_c04970 at 488.764 kb on + strand, within PGA1_c04970 at 488.764 kb on + strand, within PGA1_c04970 at 488.769 kb on + strand, within PGA1_c04970 at 488.769 kb on + strand, within PGA1_c04970 at 488.774 kb on + strand, within PGA1_c04970 at 488.774 kb on + strand, within PGA1_c04970 at 488.777 kb on - strand, within PGA1_c04970 at 488.777 kb on - strand, within PGA1_c04970 at 488.782 kb on - strand, within PGA1_c04970 at 488.816 kb on - strand at 488.867 kb on - strand at 488.902 kb on - strand at 488.933 kb on + strand at 488.941 kb on + strand at 488.942 kb on - strand at 488.949 kb on - strand at 489.023 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 488,083 - PGA1_c04960 0.60 +1.3 488,096 + PGA1_c04960 0.61 +0.6 488,096 + PGA1_c04960 0.61 +1.4 488,096 + PGA1_c04960 0.61 +0.7 488,096 + PGA1_c04960 0.61 +0.9 488,096 + PGA1_c04960 0.61 -0.6 488,096 + PGA1_c04960 0.61 -1.7 488,104 - PGA1_c04960 0.62 -0.5 488,104 - PGA1_c04960 0.62 +0.6 488,115 - PGA1_c04960 0.63 -0.5 488,126 - PGA1_c04960 0.64 -1.3 488,146 + PGA1_c04960 0.66 -0.3 488,159 + PGA1_c04960 0.68 +1.3 488,164 + PGA1_c04960 0.68 -0.9 488,167 - PGA1_c04960 0.69 -1.0 488,177 - PGA1_c04960 0.70 +1.1 488,284 + PGA1_c04960 0.81 +1.1 488,286 + PGA1_c04960 0.82 -1.8 488,329 + PGA1_c04960 0.86 -1.5 488,332 - PGA1_c04960 0.87 -0.5 488,337 - PGA1_c04960 0.87 +1.4 488,337 - PGA1_c04960 0.87 +0.1 488,366 + +0.3 488,448 + -0.4 488,448 + -0.3 488,448 + +0.6 488,448 + +0.4 488,456 - -0.3 488,472 + +0.5 488,501 - +1.1 488,558 - PGA1_c04970 0.15 -0.9 488,610 - PGA1_c04970 0.32 -0.4 488,641 - PGA1_c04970 0.43 +0.6 488,646 - PGA1_c04970 0.44 +1.9 488,650 + PGA1_c04970 0.46 -0.5 488,659 - PGA1_c04970 0.49 -0.3 488,659 - PGA1_c04970 0.49 -0.4 488,714 - PGA1_c04970 0.67 -0.2 488,738 + PGA1_c04970 0.75 -0.8 488,754 + PGA1_c04970 0.80 +0.2 488,754 + PGA1_c04970 0.80 +1.2 488,759 + PGA1_c04970 0.82 +0.4 488,764 + PGA1_c04970 0.84 +0.1 488,764 + PGA1_c04970 0.84 -1.8 488,764 + PGA1_c04970 0.84 +0.4 488,769 + PGA1_c04970 0.85 +2.9 488,769 + PGA1_c04970 0.85 +0.1 488,774 + PGA1_c04970 0.87 +1.5 488,774 + PGA1_c04970 0.87 -1.0 488,777 - PGA1_c04970 0.88 -1.0 488,777 - PGA1_c04970 0.88 -0.1 488,782 - PGA1_c04970 0.90 -0.6 488,816 - -0.0 488,867 - +0.6 488,902 - -1.2 488,933 + -1.1 488,941 + -0.4 488,942 - -0.8 488,949 - -0.6 489,023 - -0.2
Or see this region's nucleotide sequence