Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04380 and PGA1_c04390 overlap by 4 nucleotides PGA1_c04390 and PGA1_c04400 are separated by 415 nucleotides
PGA1_c04380: PGA1_c04380 - putative colanic acid biosynthesis glycosyltransferase WcaL, at 422,739 to 423,998
_c04380
PGA1_c04390: PGA1_c04390 - Predicted glycosyl transferase, at 423,995 to 425,206
_c04390
PGA1_c04400: PGA1_c04400 - mechanosensitive ion channel-like protein, at 425,622 to 427,991
_c04400
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 423.041 kb on + strand, within PGA1_c04380 at 423.049 kb on - strand, within PGA1_c04380 at 423.065 kb on + strand, within PGA1_c04380 at 423.073 kb on - strand, within PGA1_c04380 at 423.073 kb on - strand, within PGA1_c04380 at 423.238 kb on + strand, within PGA1_c04380 at 423.293 kb on - strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.350 kb on + strand, within PGA1_c04380 at 423.358 kb on - strand, within PGA1_c04380 at 423.394 kb on + strand, within PGA1_c04380 at 423.394 kb on + strand, within PGA1_c04380 at 423.394 kb on + strand, within PGA1_c04380 at 423.397 kb on - strand, within PGA1_c04380 at 423.451 kb on + strand, within PGA1_c04380 at 423.499 kb on + strand, within PGA1_c04380 at 423.499 kb on + strand, within PGA1_c04380 at 423.499 kb on + strand, within PGA1_c04380 at 423.529 kb on + strand, within PGA1_c04380 at 423.534 kb on + strand, within PGA1_c04380 at 423.537 kb on - strand, within PGA1_c04380 at 423.585 kb on - strand, within PGA1_c04380 at 423.585 kb on - strand, within PGA1_c04380 at 423.645 kb on - strand, within PGA1_c04380 at 423.645 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.650 kb on - strand, within PGA1_c04380 at 423.733 kb on + strand, within PGA1_c04380 at 423.739 kb on + strand, within PGA1_c04380 at 423.741 kb on - strand, within PGA1_c04380 at 423.851 kb on - strand, within PGA1_c04380 at 423.876 kb on + strand at 423.882 kb on + strand at 423.900 kb on + strand at 423.940 kb on - strand at 423.940 kb on - strand at 423.940 kb on - strand at 424.055 kb on + strand at 424.095 kb on + strand at 424.268 kb on + strand, within PGA1_c04390 at 424.355 kb on + strand, within PGA1_c04390 at 424.370 kb on - strand, within PGA1_c04390 at 424.494 kb on + strand, within PGA1_c04390 at 424.548 kb on - strand, within PGA1_c04390 at 424.560 kb on + strand, within PGA1_c04390 at 424.568 kb on - strand, within PGA1_c04390 at 424.573 kb on + strand, within PGA1_c04390 at 424.606 kb on - strand, within PGA1_c04390 at 424.621 kb on + strand, within PGA1_c04390 at 424.629 kb on - strand, within PGA1_c04390 at 424.629 kb on - strand, within PGA1_c04390 at 424.779 kb on + strand, within PGA1_c04390 at 424.821 kb on - strand, within PGA1_c04390 at 424.891 kb on + strand, within PGA1_c04390 at 424.899 kb on + strand, within PGA1_c04390 at 424.912 kb on - strand, within PGA1_c04390 at 424.963 kb on + strand, within PGA1_c04390 at 425.044 kb on + strand, within PGA1_c04390 at 425.055 kb on + strand, within PGA1_c04390 at 425.063 kb on - strand, within PGA1_c04390 at 425.143 kb on - strand at 425.189 kb on - strand at 425.334 kb on + strand at 425.347 kb on + strand at 425.348 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.362 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.385 kb on - strand at 425.385 kb on - strand at 425.395 kb on - strand at 425.439 kb on + strand at 425.447 kb on - strand at 425.447 kb on - strand at 425.448 kb on - strand at 425.469 kb on - strand at 425.513 kb on + strand at 425.513 kb on + strand at 425.521 kb on - strand at 425.534 kb on + strand at 425.542 kb on - strand at 425.608 kb on + strand at 425.698 kb on + strand at 425.698 kb on + strand at 425.699 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.716 kb on - strand at 425.765 kb on + strand at 425.797 kb on + strand at 425.829 kb on - strand at 425.840 kb on + strand at 425.853 kb on - strand at 425.891 kb on - strand, within PGA1_c04400 at 425.899 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.907 kb on - strand, within PGA1_c04400 at 425.912 kb on - strand, within PGA1_c04400 at 425.917 kb on - strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.967 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.029 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.082 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.104 kb on - strand, within PGA1_c04400 at 426.120 kb on + strand, within PGA1_c04400 at 426.127 kb on + strand, within PGA1_c04400 at 426.128 kb on + strand, within PGA1_c04400 at 426.128 kb on - strand, within PGA1_c04400 at 426.162 kb on + strand, within PGA1_c04400 at 426.201 kb on + strand, within PGA1_c04400
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 423,041 + PGA1_c04380 0.24 -0.3 423,049 - PGA1_c04380 0.25 -0.2 423,065 + PGA1_c04380 0.26 -1.6 423,073 - PGA1_c04380 0.27 +0.1 423,073 - PGA1_c04380 0.27 -0.7 423,238 + PGA1_c04380 0.40 +0.1 423,293 - PGA1_c04380 0.44 -1.5 423,350 + PGA1_c04380 0.48 -1.6 423,350 + PGA1_c04380 0.48 -2.5 423,350 + PGA1_c04380 0.48 -1.4 423,350 + PGA1_c04380 0.48 -0.9 423,358 - PGA1_c04380 0.49 -0.5 423,394 + PGA1_c04380 0.52 -1.1 423,394 + PGA1_c04380 0.52 -0.9 423,394 + PGA1_c04380 0.52 -2.0 423,397 - PGA1_c04380 0.52 -1.4 423,451 + PGA1_c04380 0.57 -1.7 423,499 + PGA1_c04380 0.60 -1.2 423,499 + PGA1_c04380 0.60 +0.0 423,499 + PGA1_c04380 0.60 -1.0 423,529 + PGA1_c04380 0.63 +0.4 423,534 + PGA1_c04380 0.63 -0.6 423,537 - PGA1_c04380 0.63 +0.2 423,585 - PGA1_c04380 0.67 -1.7 423,585 - PGA1_c04380 0.67 +1.2 423,645 - PGA1_c04380 0.72 +0.3 423,645 - PGA1_c04380 0.72 -1.5 423,650 - PGA1_c04380 0.72 -0.7 423,650 - PGA1_c04380 0.72 -1.1 423,650 - PGA1_c04380 0.72 -0.8 423,650 - PGA1_c04380 0.72 -0.3 423,733 + PGA1_c04380 0.79 -0.3 423,739 + PGA1_c04380 0.79 -2.1 423,741 - PGA1_c04380 0.80 -1.9 423,851 - PGA1_c04380 0.88 -0.9 423,876 + -2.3 423,882 + -1.3 423,900 + -1.1 423,940 - -1.3 423,940 - -1.5 423,940 - -0.9 424,055 + -1.4 424,095 + -0.6 424,268 + PGA1_c04390 0.23 -0.9 424,355 + PGA1_c04390 0.30 -0.9 424,370 - PGA1_c04390 0.31 -0.6 424,494 + PGA1_c04390 0.41 -2.1 424,548 - PGA1_c04390 0.46 +1.5 424,560 + PGA1_c04390 0.47 +0.3 424,568 - PGA1_c04390 0.47 -0.5 424,573 + PGA1_c04390 0.48 +1.9 424,606 - PGA1_c04390 0.50 -1.6 424,621 + PGA1_c04390 0.52 -0.3 424,629 - PGA1_c04390 0.52 -0.9 424,629 - PGA1_c04390 0.52 -2.6 424,779 + PGA1_c04390 0.65 -1.0 424,821 - PGA1_c04390 0.68 +0.3 424,891 + PGA1_c04390 0.74 -0.5 424,899 + PGA1_c04390 0.75 -2.0 424,912 - PGA1_c04390 0.76 -0.7 424,963 + PGA1_c04390 0.80 +0.7 425,044 + PGA1_c04390 0.87 -0.1 425,055 + PGA1_c04390 0.87 -1.3 425,063 - PGA1_c04390 0.88 -0.7 425,143 - -0.5 425,189 - -0.0 425,334 + -1.1 425,347 + +0.0 425,348 - -0.1 425,360 - -2.3 425,360 - -2.2 425,360 - -0.6 425,362 + -1.6 425,377 + -0.8 425,377 + -0.1 425,377 + -1.6 425,377 + -2.6 425,377 + +0.2 425,385 - -1.8 425,385 - -3.0 425,395 - -3.5 425,439 + -1.8 425,447 - -0.5 425,447 - -0.0 425,448 - -2.4 425,469 - -0.5 425,513 + -1.1 425,513 + -1.5 425,521 - -1.3 425,534 + +0.8 425,542 - -0.1 425,608 + -0.2 425,698 + +1.2 425,698 + +1.5 425,699 - -0.1 425,706 - +0.2 425,706 - +1.0 425,716 - +0.0 425,765 + +0.8 425,797 + +0.4 425,829 - +0.0 425,840 + -2.0 425,853 - +0.1 425,891 - PGA1_c04400 0.11 +1.2 425,899 + PGA1_c04400 0.12 +0.6 425,904 + PGA1_c04400 0.12 -1.8 425,904 + PGA1_c04400 0.12 +0.4 425,904 + PGA1_c04400 0.12 -1.1 425,907 - PGA1_c04400 0.12 -0.3 425,912 - PGA1_c04400 0.12 +0.1 425,917 - PGA1_c04400 0.12 +0.8 425,936 + PGA1_c04400 0.13 +2.1 425,936 + PGA1_c04400 0.13 -0.6 425,946 + PGA1_c04400 0.14 +0.3 425,946 + PGA1_c04400 0.14 -0.9 425,946 + PGA1_c04400 0.14 +1.9 425,954 - PGA1_c04400 0.14 +2.2 425,954 - PGA1_c04400 0.14 -0.1 425,954 - PGA1_c04400 0.14 -0.6 425,967 - PGA1_c04400 0.15 -0.5 425,999 - PGA1_c04400 0.16 -2.3 425,999 - PGA1_c04400 0.16 +1.2 426,019 - PGA1_c04400 0.17 +0.6 426,019 - PGA1_c04400 0.17 -0.7 426,024 - PGA1_c04400 0.17 +1.6 426,024 - PGA1_c04400 0.17 +0.2 426,029 + PGA1_c04400 0.17 +1.4 426,040 + PGA1_c04400 0.18 -0.4 426,040 + PGA1_c04400 0.18 +0.2 426,040 + PGA1_c04400 0.18 -0.3 426,040 + PGA1_c04400 0.18 +0.1 426,040 + PGA1_c04400 0.18 -0.0 426,040 + PGA1_c04400 0.18 -0.7 426,048 - PGA1_c04400 0.18 -0.8 426,048 - PGA1_c04400 0.18 +0.9 426,082 + PGA1_c04400 0.19 -0.1 426,096 + PGA1_c04400 0.20 +0.2 426,096 + PGA1_c04400 0.20 -1.5 426,096 + PGA1_c04400 0.20 -0.3 426,104 - PGA1_c04400 0.20 -0.5 426,120 + PGA1_c04400 0.21 +1.3 426,127 + PGA1_c04400 0.21 +1.9 426,128 + PGA1_c04400 0.21 +0.5 426,128 - PGA1_c04400 0.21 -1.9 426,162 + PGA1_c04400 0.23 -0.2 426,201 + PGA1_c04400 0.24 -0.8
Or see this region's nucleotide sequence