Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04360

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04350 and PGA1_c04360 overlap by 4 nucleotidesPGA1_c04360 and PGA1_c04370 overlap by 4 nucleotides PGA1_c04350: PGA1_c04350 - putative glycosyltransferase protein, at 419,898 to 421,040 _c04350 PGA1_c04360: PGA1_c04360 - putative phosphoglycerate mutase family protein, at 421,037 to 421,627 _c04360 PGA1_c04370: PGA1_c04370 - putative glycosyltransferase protein, at 421,624 to 422,658 _c04370 Position (kb) 421 422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 420.068 kb on + strand, within PGA1_c04350at 420.068 kb on + strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.076 kb on - strand, within PGA1_c04350at 420.156 kb on + strand, within PGA1_c04350at 420.237 kb on + strand, within PGA1_c04350at 420.259 kb on - strand, within PGA1_c04350at 420.261 kb on - strand, within PGA1_c04350at 420.276 kb on - strand, within PGA1_c04350at 420.324 kb on + strand, within PGA1_c04350at 420.378 kb on + strand, within PGA1_c04350at 420.435 kb on - strand, within PGA1_c04350at 420.558 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.665 kb on + strand, within PGA1_c04350at 420.678 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.701 kb on + strand, within PGA1_c04350at 420.719 kb on - strand, within PGA1_c04350at 420.746 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.775 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.780 kb on - strand, within PGA1_c04350at 420.782 kb on + strand, within PGA1_c04350at 420.804 kb on + strand, within PGA1_c04350at 420.812 kb on - strand, within PGA1_c04350at 420.895 kb on - strand, within PGA1_c04350at 420.902 kb on + strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.910 kb on - strand, within PGA1_c04350at 420.922 kb on - strand, within PGA1_c04350at 420.940 kb on - strandat 420.977 kb on + strandat 420.990 kb on + strandat 420.993 kb on + strandat 420.998 kb on + strandat 420.998 kb on + strandat 421.003 kb on + strandat 421.144 kb on + strand, within PGA1_c04360at 421.215 kb on + strand, within PGA1_c04360at 421.243 kb on + strand, within PGA1_c04360at 421.297 kb on - strand, within PGA1_c04360at 421.313 kb on + strand, within PGA1_c04360at 421.321 kb on - strand, within PGA1_c04360at 421.355 kb on - strand, within PGA1_c04360at 421.355 kb on - strand, within PGA1_c04360at 421.362 kb on - strand, within PGA1_c04360at 421.372 kb on + strand, within PGA1_c04360at 421.377 kb on - strand, within PGA1_c04360at 421.377 kb on - strand, within PGA1_c04360at 421.380 kb on - strand, within PGA1_c04360at 421.391 kb on - strand, within PGA1_c04360at 421.468 kb on + strand, within PGA1_c04360at 421.476 kb on - strand, within PGA1_c04360at 421.480 kb on - strand, within PGA1_c04360at 421.503 kb on + strand, within PGA1_c04360at 421.534 kb on - strand, within PGA1_c04360at 421.536 kb on + strand, within PGA1_c04360at 421.591 kb on - strandat 421.604 kb on + strandat 421.645 kb on + strandat 421.690 kb on + strandat 421.726 kb on - strandat 421.748 kb on - strand, within PGA1_c04370at 421.808 kb on - strand, within PGA1_c04370at 421.819 kb on - strand, within PGA1_c04370at 421.828 kb on + strand, within PGA1_c04370at 421.838 kb on + strand, within PGA1_c04370at 421.846 kb on - strand, within PGA1_c04370at 421.848 kb on + strand, within PGA1_c04370at 421.856 kb on - strand, within PGA1_c04370at 421.936 kb on + strand, within PGA1_c04370at 422.026 kb on + strand, within PGA1_c04370at 422.039 kb on - strand, within PGA1_c04370at 422.044 kb on - strand, within PGA1_c04370at 422.050 kb on - strand, within PGA1_c04370at 422.084 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.141 kb on + strand, within PGA1_c04370at 422.146 kb on + strand, within PGA1_c04370at 422.169 kb on - strand, within PGA1_c04370at 422.171 kb on - strand, within PGA1_c04370at 422.272 kb on + strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.280 kb on - strand, within PGA1_c04370at 422.302 kb on + strand, within PGA1_c04370at 422.396 kb on - strand, within PGA1_c04370at 422.537 kb on + strand, within PGA1_c04370at 422.545 kb on - strand, within PGA1_c04370at 422.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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420,068 + PGA1_c04350 0.15 -0.5
420,068 + PGA1_c04350 0.15 -1.9
420,076 - PGA1_c04350 0.16 +0.3
420,076 - PGA1_c04350 0.16 -0.1
420,076 - PGA1_c04350 0.16 -1.1
420,076 - PGA1_c04350 0.16 +0.9
420,156 + PGA1_c04350 0.23 +0.5
420,237 + PGA1_c04350 0.30 -0.4
420,259 - PGA1_c04350 0.32 -0.5
420,261 - PGA1_c04350 0.32 -1.0
420,276 - PGA1_c04350 0.33 -0.4
420,324 + PGA1_c04350 0.37 -0.7
420,378 + PGA1_c04350 0.42 -0.2
420,435 - PGA1_c04350 0.47 -1.8
420,558 + PGA1_c04350 0.58 -2.2
420,665 + PGA1_c04350 0.67 -0.9
420,665 + PGA1_c04350 0.67 +0.0
420,665 + PGA1_c04350 0.67 -0.9
420,665 + PGA1_c04350 0.67 -0.3
420,678 + PGA1_c04350 0.68 +0.3
420,701 + PGA1_c04350 0.70 -1.6
420,701 + PGA1_c04350 0.70 -1.7
420,701 + PGA1_c04350 0.70 -0.5
420,719 - PGA1_c04350 0.72 -1.1
420,746 - PGA1_c04350 0.74 -0.5
420,775 - PGA1_c04350 0.77 +0.6
420,775 - PGA1_c04350 0.77 -2.3
420,780 - PGA1_c04350 0.77 -1.9
420,780 - PGA1_c04350 0.77 -0.7
420,782 + PGA1_c04350 0.77 -0.7
420,804 + PGA1_c04350 0.79 -1.6
420,812 - PGA1_c04350 0.80 -0.9
420,895 - PGA1_c04350 0.87 -2.6
420,902 + PGA1_c04350 0.88 -0.1
420,910 - PGA1_c04350 0.89 -0.9
420,910 - PGA1_c04350 0.89 -1.0
420,910 - PGA1_c04350 0.89 -1.6
420,922 - PGA1_c04350 0.90 -0.7
420,940 - -0.7
420,977 + +0.3
420,990 + +1.3
420,993 + -2.0
420,998 + -0.5
420,998 + -2.6
421,003 + +0.1
421,144 + PGA1_c04360 0.18 -0.6
421,215 + PGA1_c04360 0.30 -1.2
421,243 + PGA1_c04360 0.35 -0.0
421,297 - PGA1_c04360 0.44 +0.7
421,313 + PGA1_c04360 0.47 -1.1
421,321 - PGA1_c04360 0.48 +1.7
421,355 - PGA1_c04360 0.54 -0.3
421,355 - PGA1_c04360 0.54 -0.8
421,362 - PGA1_c04360 0.55 -2.5
421,372 + PGA1_c04360 0.57 -0.5
421,377 - PGA1_c04360 0.58 +1.9
421,377 - PGA1_c04360 0.58 -0.7
421,380 - PGA1_c04360 0.58 -1.3
421,391 - PGA1_c04360 0.60 -2.7
421,468 + PGA1_c04360 0.73 -2.3
421,476 - PGA1_c04360 0.74 +1.6
421,480 - PGA1_c04360 0.75 -0.9
421,503 + PGA1_c04360 0.79 -2.5
421,534 - PGA1_c04360 0.84 -0.7
421,536 + PGA1_c04360 0.84 -2.4
421,591 - -0.1
421,604 + -0.0
421,645 + -0.3
421,690 + -1.2
421,726 - -1.1
421,748 - PGA1_c04370 0.12 -1.4
421,808 - PGA1_c04370 0.18 -0.1
421,819 - PGA1_c04370 0.19 -1.3
421,828 + PGA1_c04370 0.20 -2.5
421,838 + PGA1_c04370 0.21 -1.5
421,846 - PGA1_c04370 0.21 -0.4
421,848 + PGA1_c04370 0.22 -0.4
421,856 - PGA1_c04370 0.22 -2.0
421,936 + PGA1_c04370 0.30 +0.4
422,026 + PGA1_c04370 0.39 -0.6
422,039 - PGA1_c04370 0.40 -0.7
422,044 - PGA1_c04370 0.41 -1.3
422,050 - PGA1_c04370 0.41 -2.2
422,084 + PGA1_c04370 0.44 -0.5
422,141 + PGA1_c04370 0.50 -2.2
422,141 + PGA1_c04370 0.50 -1.5
422,146 + PGA1_c04370 0.50 -1.7
422,169 - PGA1_c04370 0.53 -1.3
422,171 - PGA1_c04370 0.53 +3.2
422,272 + PGA1_c04370 0.63 -0.4
422,280 - PGA1_c04370 0.63 -1.2
422,280 - PGA1_c04370 0.63 -1.1
422,302 + PGA1_c04370 0.66 -0.3
422,396 - PGA1_c04370 0.75 -2.8
422,537 + PGA1_c04370 0.88 -1.0
422,545 - PGA1_c04370 0.89 -1.5
422,619 + -1.1

Or see this region's nucleotide sequence