Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00200 and PGA1_65p00210 are separated by 317 nucleotides PGA1_65p00210 and PGA1_65p00220 are separated by 0 nucleotides PGA1_65p00220 and PGA1_65p00230 overlap by 4 nucleotides
PGA1_65p00200: PGA1_65p00200 - putative polysaccharide biosynthesis/export protein, at 26,175 to 27,314
_65p00200
PGA1_65p00210: PGA1_65p00210 - hypothetical protein, at 27,632 to 28,486
_65p00210
PGA1_65p00220: PGA1_65p00220 - glucose-1-phosphate thymidylyltransferase RfbA, at 28,487 to 29,377
_65p00220
PGA1_65p00230: PGA1_65p00230 - dTDP-4-dehydrorhamnose reductase RfbD, at 29,374 to 30,222
_65p00230
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 27.000 kb on + strand, within PGA1_65p00200 at 27.308 kb on + strand at 27.391 kb on + strand at 27.523 kb on + strand at 27.620 kb on - strand at 27.725 kb on + strand, within PGA1_65p00210 at 27.826 kb on - strand, within PGA1_65p00210 at 27.914 kb on - strand, within PGA1_65p00210 at 28.046 kb on + strand, within PGA1_65p00210 at 28.123 kb on + strand, within PGA1_65p00210 at 28.292 kb on - strand, within PGA1_65p00210 at 28.363 kb on - strand, within PGA1_65p00210 at 28.416 kb on + strand at 29.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 27,000 + PGA1_65p00200 0.72 -1.4 27,308 + +1.0 27,391 + -0.7 27,523 + +0.8 27,620 - +0.9 27,725 + PGA1_65p00210 0.11 +0.1 27,826 - PGA1_65p00210 0.23 -2.2 27,914 - PGA1_65p00210 0.33 -1.2 28,046 + PGA1_65p00210 0.48 +0.5 28,123 + PGA1_65p00210 0.57 +1.2 28,292 - PGA1_65p00210 0.77 +1.6 28,363 - PGA1_65p00210 0.85 +2.8 28,416 + -0.1 29,387 + -0.0
Or see this region's nucleotide sequence