Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00160 and PGA1_78p00170 are separated by 86 nucleotides PGA1_78p00170 and PGA1_78p00180 overlap by 8 nucleotides PGA1_78p00180 and PGA1_78p00190 are separated by 6 nucleotides
PGA1_78p00160: PGA1_78p00160 - putative sugar-binding periplasmic protein, at 19,025 to 20,254
_78p00160
PGA1_78p00170: PGA1_78p00170 - putative sn-glycerol-3-phosphate transport system permease protein UgpA, at 20,341 to 21,273
_78p00170
PGA1_78p00180: PGA1_78p00180 - putative sn-glycerol-3-phosphate transport system permease protein UgpE, at 21,266 to 22,195
_78p00180
PGA1_78p00190: PGA1_78p00190 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 22,202 to 23,287
_78p00190
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1 at 19.414 kb on + strand, within PGA1_78p00160 at 19.414 kb on + strand, within PGA1_78p00160 at 19.461 kb on - strand, within PGA1_78p00160 at 19.464 kb on + strand, within PGA1_78p00160 at 19.579 kb on - strand, within PGA1_78p00160 at 19.812 kb on - strand, within PGA1_78p00160 at 20.114 kb on + strand, within PGA1_78p00160 at 20.132 kb on - strand at 20.226 kb on + strand at 20.593 kb on - strand, within PGA1_78p00170 at 20.735 kb on + strand, within PGA1_78p00170 at 20.828 kb on + strand, within PGA1_78p00170 at 21.104 kb on - strand, within PGA1_78p00170 at 21.172 kb on - strand, within PGA1_78p00170 at 21.439 kb on + strand, within PGA1_78p00180 at 21.517 kb on + strand, within PGA1_78p00180 at 21.554 kb on + strand, within PGA1_78p00180 at 21.753 kb on + strand, within PGA1_78p00180 at 22.116 kb on + strand at 22.192 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 19,414 + PGA1_78p00160 0.32 +1.6 19,414 + PGA1_78p00160 0.32 +0.3 19,461 - PGA1_78p00160 0.35 +0.2 19,464 + PGA1_78p00160 0.36 +1.0 19,579 - PGA1_78p00160 0.45 -0.9 19,812 - PGA1_78p00160 0.64 +0.2 20,114 + PGA1_78p00160 0.89 +0.9 20,132 - -1.3 20,226 + -0.4 20,593 - PGA1_78p00170 0.27 +0.9 20,735 + PGA1_78p00170 0.42 +0.3 20,828 + PGA1_78p00170 0.52 +1.0 21,104 - PGA1_78p00170 0.82 +1.3 21,172 - PGA1_78p00170 0.89 +0.4 21,439 + PGA1_78p00180 0.19 +0.6 21,517 + PGA1_78p00180 0.27 +0.9 21,554 + PGA1_78p00180 0.31 -1.0 21,753 + PGA1_78p00180 0.52 +0.6 22,116 + +0.9 22,192 - -0.5
Or see this region's nucleotide sequence