Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02160 and PGA1_262p02170 are separated by 24 nucleotides PGA1_262p02170 and PGA1_262p02180 are separated by 187 nucleotides PGA1_262p02180 and PGA1_262p02190 are separated by 9 nucleotides PGA1_262p02190 and PGA1_262p02200 overlap by 7 nucleotides
PGA1_262p02160: PGA1_262p02160 - putative chemotaxis response regulator protein-glutamate methylesterase, at 233,910 to 234,914
_262p02160
PGA1_262p02170: PGA1_262p02170 - putative chemoreceptor glutamine deamidase CheD, at 234,939 to 235,493
_262p02170
PGA1_262p02180: PGA1_262p02180 - molybdate-binding periplasmic protein ModA, at 235,681 to 236,496
_262p02180
PGA1_262p02190: PGA1_262p02190 - molybdenum transport system permease protein ModB, at 236,506 to 237,204
_262p02190
PGA1_262p02200: PGA1_262p02200 - molybdenum import ATP-binding protein ModC, at 237,198 to 238,289
_262p02200
Position (kb) 235
236
237 Strain fitness (log2 ratio) -1
0
1
2 at 234.684 kb on + strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.732 kb on + strand, within PGA1_262p02160 at 234.735 kb on - strand, within PGA1_262p02160 at 234.740 kb on - strand, within PGA1_262p02160 at 234.752 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.980 kb on - strand at 235.060 kb on - strand, within PGA1_262p02170 at 235.095 kb on + strand, within PGA1_262p02170 at 235.133 kb on + strand, within PGA1_262p02170 at 235.278 kb on + strand, within PGA1_262p02170 at 235.560 kb on + strand at 235.641 kb on + strand at 235.644 kb on - strand at 235.696 kb on - strand at 235.715 kb on + strand at 235.723 kb on - strand at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.843 kb on - strand, within PGA1_262p02180 at 235.854 kb on + strand, within PGA1_262p02180 at 235.862 kb on - strand, within PGA1_262p02180 at 235.977 kb on - strand, within PGA1_262p02180 at 236.060 kb on + strand, within PGA1_262p02180 at 236.151 kb on + strand, within PGA1_262p02180 at 236.151 kb on + strand, within PGA1_262p02180 at 236.159 kb on - strand, within PGA1_262p02180 at 236.306 kb on + strand, within PGA1_262p02180 at 236.314 kb on - strand, within PGA1_262p02180 at 236.324 kb on + strand, within PGA1_262p02180 at 236.465 kb on - strand at 236.481 kb on - strand at 236.487 kb on + strand at 236.723 kb on + strand, within PGA1_262p02190 at 236.731 kb on - strand, within PGA1_262p02190 at 237.170 kb on + strand at 237.383 kb on + strand, within PGA1_262p02200 at 237.460 kb on - strand, within PGA1_262p02200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 234,684 + PGA1_262p02160 0.77 +1.2 234,684 + PGA1_262p02160 0.77 +0.8 234,692 - PGA1_262p02160 0.78 +1.8 234,692 - PGA1_262p02160 0.78 +1.8 234,732 + PGA1_262p02160 0.82 -1.3 234,735 - PGA1_262p02160 0.82 +0.5 234,740 - PGA1_262p02160 0.83 -0.7 234,752 - PGA1_262p02160 0.84 -0.1 234,785 - PGA1_262p02160 0.87 +0.8 234,785 - PGA1_262p02160 0.87 +1.1 234,980 - +0.2 235,060 - PGA1_262p02170 0.22 +0.8 235,095 + PGA1_262p02170 0.28 +0.2 235,133 + PGA1_262p02170 0.35 +0.0 235,278 + PGA1_262p02170 0.61 +0.4 235,560 + +0.2 235,641 + -0.5 235,644 - -1.7 235,696 - +0.9 235,715 + -1.7 235,723 - +0.6 235,832 - PGA1_262p02180 0.19 -0.1 235,832 - PGA1_262p02180 0.19 +0.7 235,832 - PGA1_262p02180 0.19 +0.6 235,843 - PGA1_262p02180 0.20 +1.1 235,854 + PGA1_262p02180 0.21 +1.6 235,862 - PGA1_262p02180 0.22 -0.7 235,977 - PGA1_262p02180 0.36 +0.7 236,060 + PGA1_262p02180 0.46 +1.2 236,151 + PGA1_262p02180 0.58 +0.4 236,151 + PGA1_262p02180 0.58 +1.1 236,159 - PGA1_262p02180 0.59 +1.4 236,306 + PGA1_262p02180 0.77 +1.5 236,314 - PGA1_262p02180 0.78 -0.1 236,324 + PGA1_262p02180 0.79 +0.8 236,465 - -0.9 236,481 - -0.3 236,487 + +0.2 236,723 + PGA1_262p02190 0.31 +0.4 236,731 - PGA1_262p02190 0.32 +0.7 237,170 + +0.6 237,383 + PGA1_262p02200 0.17 +0.2 237,460 - PGA1_262p02200 0.24 +0.8
Or see this region's nucleotide sequence