Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02150 and PGA1_262p02160 are separated by 94 nucleotides PGA1_262p02160 and PGA1_262p02170 are separated by 24 nucleotides PGA1_262p02170 and PGA1_262p02180 are separated by 187 nucleotides
PGA1_262p02150: PGA1_262p02150 - methyl-accepting chemotaxis protein I, at 231,416 to 233,815
_262p02150
PGA1_262p02160: PGA1_262p02160 - putative chemotaxis response regulator protein-glutamate methylesterase, at 233,910 to 234,914
_262p02160
PGA1_262p02170: PGA1_262p02170 - putative chemoreceptor glutamine deamidase CheD, at 234,939 to 235,493
_262p02170
PGA1_262p02180: PGA1_262p02180 - molybdate-binding periplasmic protein ModA, at 235,681 to 236,496
_262p02180
Position (kb) 233
234
235 Strain fitness (log2 ratio) -1
0
1
2 at 233.928 kb on - strand at 233.967 kb on - strand at 234.061 kb on - strand, within PGA1_262p02160 at 234.065 kb on - strand, within PGA1_262p02160 at 234.072 kb on + strand, within PGA1_262p02160 at 234.126 kb on + strand, within PGA1_262p02160 at 234.151 kb on - strand, within PGA1_262p02160 at 234.339 kb on + strand, within PGA1_262p02160 at 234.401 kb on - strand, within PGA1_262p02160 at 234.418 kb on - strand, within PGA1_262p02160 at 234.428 kb on - strand, within PGA1_262p02160 at 234.515 kb on + strand, within PGA1_262p02160 at 234.523 kb on - strand, within PGA1_262p02160 at 234.590 kb on + strand, within PGA1_262p02160 at 234.590 kb on + strand, within PGA1_262p02160 at 234.599 kb on - strand, within PGA1_262p02160 at 234.609 kb on - strand, within PGA1_262p02160 at 234.623 kb on + strand, within PGA1_262p02160 at 234.623 kb on + strand, within PGA1_262p02160 at 234.631 kb on - strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.732 kb on + strand, within PGA1_262p02160 at 234.735 kb on - strand, within PGA1_262p02160 at 234.740 kb on - strand, within PGA1_262p02160 at 234.752 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.980 kb on - strand at 235.060 kb on - strand, within PGA1_262p02170 at 235.095 kb on + strand, within PGA1_262p02170 at 235.133 kb on + strand, within PGA1_262p02170 at 235.278 kb on + strand, within PGA1_262p02170 at 235.560 kb on + strand at 235.641 kb on + strand at 235.644 kb on - strand at 235.696 kb on - strand at 235.715 kb on + strand at 235.723 kb on - strand at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.843 kb on - strand, within PGA1_262p02180 at 235.854 kb on + strand, within PGA1_262p02180 at 235.862 kb on - strand, within PGA1_262p02180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 233,928 - -1.5 233,967 - -0.3 234,061 - PGA1_262p02160 0.15 -1.6 234,065 - PGA1_262p02160 0.15 +0.9 234,072 + PGA1_262p02160 0.16 -0.2 234,126 + PGA1_262p02160 0.21 -0.8 234,151 - PGA1_262p02160 0.24 -0.3 234,339 + PGA1_262p02160 0.43 +2.1 234,401 - PGA1_262p02160 0.49 -0.8 234,418 - PGA1_262p02160 0.51 +1.3 234,428 - PGA1_262p02160 0.52 +0.3 234,515 + PGA1_262p02160 0.60 +1.9 234,523 - PGA1_262p02160 0.61 -0.5 234,590 + PGA1_262p02160 0.68 +0.2 234,590 + PGA1_262p02160 0.68 -0.0 234,599 - PGA1_262p02160 0.69 +0.4 234,609 - PGA1_262p02160 0.70 -0.3 234,623 + PGA1_262p02160 0.71 +1.4 234,623 + PGA1_262p02160 0.71 -0.7 234,631 - PGA1_262p02160 0.72 +0.7 234,684 + PGA1_262p02160 0.77 +1.2 234,684 + PGA1_262p02160 0.77 +0.8 234,692 - PGA1_262p02160 0.78 +1.8 234,692 - PGA1_262p02160 0.78 +1.8 234,732 + PGA1_262p02160 0.82 -1.3 234,735 - PGA1_262p02160 0.82 +0.5 234,740 - PGA1_262p02160 0.83 -0.7 234,752 - PGA1_262p02160 0.84 -0.1 234,785 - PGA1_262p02160 0.87 +0.8 234,785 - PGA1_262p02160 0.87 +1.1 234,980 - +0.2 235,060 - PGA1_262p02170 0.22 +0.8 235,095 + PGA1_262p02170 0.28 +0.2 235,133 + PGA1_262p02170 0.35 +0.0 235,278 + PGA1_262p02170 0.61 +0.4 235,560 + +0.2 235,641 + -0.5 235,644 - -1.7 235,696 - +0.9 235,715 + -1.7 235,723 - +0.6 235,832 - PGA1_262p02180 0.19 -0.1 235,832 - PGA1_262p02180 0.19 +0.7 235,832 - PGA1_262p02180 0.19 +0.6 235,843 - PGA1_262p02180 0.20 +1.1 235,854 + PGA1_262p02180 0.21 +1.6 235,862 - PGA1_262p02180 0.22 -0.7
Or see this region's nucleotide sequence