Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01840

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_262p01830 and PGA1_262p01840 are separated by 0 nucleotidesPGA1_262p01840 and PGA1_262p01850 are separated by 79 nucleotidesPGA1_262p01850 and PGA1_262p01860 are separated by 55 nucleotides PGA1_262p01830: PGA1_262p01830 - putative aminomethyltransferase, at 201,453 to 202,559 _262p01830 PGA1_262p01840: PGA1_262p01840 - ATP-dependent AMP binding enzyme, at 202,560 to 204,191 _262p01840 PGA1_262p01850: PGA1_262p01850 - putative enoyl-CoA hydratase, at 204,271 to 205,077 _262p01850 PGA1_262p01860: PGA1_262p01860 - putative acyl-Co-A dehydrogenase, at 205,133 to 206,911 _262p01860 Position (kb) 202 203 204 205Strain fitness (log2 ratio) -2 -1 0 1 2 3at 201.595 kb on + strand, within PGA1_262p01830at 201.595 kb on + strand, within PGA1_262p01830at 201.674 kb on - strand, within PGA1_262p01830at 201.784 kb on + strand, within PGA1_262p01830at 201.838 kb on + strand, within PGA1_262p01830at 201.859 kb on - strand, within PGA1_262p01830at 201.859 kb on - strand, within PGA1_262p01830at 201.867 kb on + strand, within PGA1_262p01830at 201.879 kb on - strand, within PGA1_262p01830at 201.884 kb on + strand, within PGA1_262p01830at 201.893 kb on - strand, within PGA1_262p01830at 201.899 kb on + strand, within PGA1_262p01830at 201.900 kb on + strand, within PGA1_262p01830at 201.903 kb on - strand, within PGA1_262p01830at 201.918 kb on - strand, within PGA1_262p01830at 201.955 kb on + strand, within PGA1_262p01830at 201.974 kb on + strand, within PGA1_262p01830at 202.085 kb on + strand, within PGA1_262p01830at 202.250 kb on - strand, within PGA1_262p01830at 202.279 kb on + strand, within PGA1_262p01830at 202.310 kb on + strand, within PGA1_262p01830at 202.318 kb on - strand, within PGA1_262p01830at 202.329 kb on - strand, within PGA1_262p01830at 202.329 kb on - strand, within PGA1_262p01830at 202.364 kb on - strand, within PGA1_262p01830at 202.369 kb on - strand, within PGA1_262p01830at 202.405 kb on + strand, within PGA1_262p01830at 202.405 kb on + strand, within PGA1_262p01830at 202.405 kb on + strand, within PGA1_262p01830at 202.413 kb on - strand, within PGA1_262p01830at 202.413 kb on - strand, within PGA1_262p01830at 202.413 kb on - strand, within PGA1_262p01830at 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.464 kb on + strandat 202.472 kb on + strandat 202.472 kb on + strandat 202.472 kb on - strandat 202.472 kb on - strandat 202.472 kb on - strandat 202.489 kb on + strandat 202.489 kb on + strandat 202.564 kb on - strandat 202.564 kb on - strandat 202.566 kb on + strandat 202.648 kb on + strandat 202.754 kb on - strand, within PGA1_262p01840at 202.799 kb on - strand, within PGA1_262p01840at 202.914 kb on - strand, within PGA1_262p01840at 202.925 kb on + strand, within PGA1_262p01840at 202.933 kb on - strand, within PGA1_262p01840at 202.938 kb on - strand, within PGA1_262p01840at 203.005 kb on - strand, within PGA1_262p01840at 203.005 kb on - strand, within PGA1_262p01840at 203.083 kb on + strand, within PGA1_262p01840at 203.106 kb on + strand, within PGA1_262p01840at 203.145 kb on - strand, within PGA1_262p01840at 203.152 kb on + strand, within PGA1_262p01840at 203.152 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.222 kb on + strand, within PGA1_262p01840at 203.230 kb on - strand, within PGA1_262p01840at 203.230 kb on - strand, within PGA1_262p01840at 203.230 kb on - strand, within PGA1_262p01840at 203.283 kb on - strand, within PGA1_262p01840at 203.478 kb on + strand, within PGA1_262p01840at 203.570 kb on + strand, within PGA1_262p01840at 203.599 kb on + strand, within PGA1_262p01840at 203.599 kb on + strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.607 kb on - strand, within PGA1_262p01840at 203.631 kb on + strand, within PGA1_262p01840at 203.727 kb on + strand, within PGA1_262p01840at 203.730 kb on + strand, within PGA1_262p01840at 203.959 kb on - strand, within PGA1_262p01840at 203.991 kb on - strand, within PGA1_262p01840at 204.086 kb on - strandat 204.091 kb on - strandat 204.117 kb on + strandat 204.133 kb on + strandat 204.143 kb on + strandat 204.143 kb on + strandat 204.151 kb on - strandat 204.225 kb on + strandat 204.277 kb on + strandat 204.321 kb on - strandat 204.333 kb on - strandat 204.456 kb on + strand, within PGA1_262p01850at 204.459 kb on - strand, within PGA1_262p01850at 204.464 kb on - strand, within PGA1_262p01850at 204.464 kb on - strand, within PGA1_262p01850at 204.521 kb on + strand, within PGA1_262p01850at 204.627 kb on - strand, within PGA1_262p01850at 204.778 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.797 kb on - strand, within PGA1_262p01850at 204.811 kb on - strand, within PGA1_262p01850at 204.822 kb on + strand, within PGA1_262p01850at 204.827 kb on + strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.830 kb on - strand, within PGA1_262p01850at 204.839 kb on + strand, within PGA1_262p01850at 204.845 kb on - strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.858 kb on + strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.866 kb on - strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.914 kb on + strand, within PGA1_262p01850at 204.922 kb on - strand, within PGA1_262p01850at 204.922 kb on - strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.929 kb on + strand, within PGA1_262p01850at 204.937 kb on - strand, within PGA1_262p01850at 204.937 kb on - strand, within PGA1_262p01850at 204.959 kb on - strand, within PGA1_262p01850at 205.029 kb on + strandat 205.029 kb on + strandat 205.029 kb on + strandat 205.042 kb on + strandat 205.046 kb on + strandat 205.053 kb on + strandat 205.054 kb on - strandat 205.096 kb on + strandat 205.145 kb on - strandat 205.162 kb on + strandat 205.170 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
remove
201,595 + PGA1_262p01830 0.13 -0.0
201,595 + PGA1_262p01830 0.13 +0.2
201,674 - PGA1_262p01830 0.20 -0.5
201,784 + PGA1_262p01830 0.30 +0.5
201,838 + PGA1_262p01830 0.35 -0.2
201,859 - PGA1_262p01830 0.37 +0.6
201,859 - PGA1_262p01830 0.37 -0.0
201,867 + PGA1_262p01830 0.37 -1.7
201,879 - PGA1_262p01830 0.38 +0.2
201,884 + PGA1_262p01830 0.39 +0.4
201,893 - PGA1_262p01830 0.40 -0.5
201,899 + PGA1_262p01830 0.40 +0.2
201,900 + PGA1_262p01830 0.40 +0.2
201,903 - PGA1_262p01830 0.41 +0.4
201,918 - PGA1_262p01830 0.42 +0.2
201,955 + PGA1_262p01830 0.45 +0.6
201,974 + PGA1_262p01830 0.47 +0.5
202,085 + PGA1_262p01830 0.57 +0.9
202,250 - PGA1_262p01830 0.72 -1.1
202,279 + PGA1_262p01830 0.75 +0.2
202,310 + PGA1_262p01830 0.77 +0.3
202,318 - PGA1_262p01830 0.78 -1.2
202,329 - PGA1_262p01830 0.79 -0.6
202,329 - PGA1_262p01830 0.79 -0.4
202,364 - PGA1_262p01830 0.82 +0.5
202,369 - PGA1_262p01830 0.83 +0.1
202,405 + PGA1_262p01830 0.86 -0.5
202,405 + PGA1_262p01830 0.86 +0.8
202,405 + PGA1_262p01830 0.86 -0.8
202,413 - PGA1_262p01830 0.87 -0.8
202,413 - PGA1_262p01830 0.87 +0.5
202,413 - PGA1_262p01830 0.87 -0.6
202,464 + -0.9
202,464 + +0.5
202,464 + +0.7
202,464 + -0.2
202,464 + -0.8
202,464 + -0.2
202,472 + +1.1
202,472 + +0.7
202,472 - -0.7
202,472 - +0.6
202,472 - -0.8
202,489 + +0.5
202,489 + -0.1
202,564 - -2.1
202,564 - -0.0
202,566 + +1.1
202,648 + +1.2
202,754 - PGA1_262p01840 0.12 -0.2
202,799 - PGA1_262p01840 0.15 -0.1
202,914 - PGA1_262p01840 0.22 +0.2
202,925 + PGA1_262p01840 0.22 +1.4
202,933 - PGA1_262p01840 0.23 +0.7
202,938 - PGA1_262p01840 0.23 +0.9
203,005 - PGA1_262p01840 0.27 -0.1
203,005 - PGA1_262p01840 0.27 +0.3
203,083 + PGA1_262p01840 0.32 +0.4
203,106 + PGA1_262p01840 0.33 +0.3
203,145 - PGA1_262p01840 0.36 +0.9
203,152 + PGA1_262p01840 0.36 +0.6
203,152 + PGA1_262p01840 0.36 -0.2
203,222 + PGA1_262p01840 0.41 +0.5
203,222 + PGA1_262p01840 0.41 +0.3
203,222 + PGA1_262p01840 0.41 -0.3
203,222 + PGA1_262p01840 0.41 -0.0
203,222 + PGA1_262p01840 0.41 -0.8
203,230 - PGA1_262p01840 0.41 +0.9
203,230 - PGA1_262p01840 0.41 -0.2
203,230 - PGA1_262p01840 0.41 -1.3
203,283 - PGA1_262p01840 0.44 -1.5
203,478 + PGA1_262p01840 0.56 +0.2
203,570 + PGA1_262p01840 0.62 -1.2
203,599 + PGA1_262p01840 0.64 +0.9
203,599 + PGA1_262p01840 0.64 +1.7
203,607 - PGA1_262p01840 0.64 +1.2
203,607 - PGA1_262p01840 0.64 -1.4
203,607 - PGA1_262p01840 0.64 +1.3
203,607 - PGA1_262p01840 0.64 +0.5
203,607 - PGA1_262p01840 0.64 +3.6
203,631 + PGA1_262p01840 0.66 +2.1
203,727 + PGA1_262p01840 0.72 -0.8
203,730 + PGA1_262p01840 0.72 +0.2
203,959 - PGA1_262p01840 0.86 -0.5
203,991 - PGA1_262p01840 0.88 -0.4
204,086 - +0.4
204,091 - +0.4
204,117 + +0.5
204,133 + -0.9
204,143 + +1.1
204,143 + +0.7
204,151 - +1.2
204,225 + -1.4
204,277 + -1.0
204,321 - +0.1
204,333 - +0.1
204,456 + PGA1_262p01850 0.23 +1.0
204,459 - PGA1_262p01850 0.23 +0.7
204,464 - PGA1_262p01850 0.24 -0.7
204,464 - PGA1_262p01850 0.24 +1.0
204,521 + PGA1_262p01850 0.31 +0.6
204,627 - PGA1_262p01850 0.44 +1.4
204,778 - PGA1_262p01850 0.63 +0.0
204,797 - PGA1_262p01850 0.65 +1.1
204,797 - PGA1_262p01850 0.65 -1.4
204,797 - PGA1_262p01850 0.65 +1.2
204,797 - PGA1_262p01850 0.65 +0.5
204,797 - PGA1_262p01850 0.65 +1.0
204,811 - PGA1_262p01850 0.67 -0.7
204,822 + PGA1_262p01850 0.68 -1.3
204,827 + PGA1_262p01850 0.69 -1.0
204,830 - PGA1_262p01850 0.69 -0.5
204,830 - PGA1_262p01850 0.69 +1.8
204,830 - PGA1_262p01850 0.69 +0.6
204,839 + PGA1_262p01850 0.70 +0.8
204,845 - PGA1_262p01850 0.71 +1.1
204,858 + PGA1_262p01850 0.73 +0.3
204,858 + PGA1_262p01850 0.73 +0.4
204,858 + PGA1_262p01850 0.73 -0.8
204,858 + PGA1_262p01850 0.73 -0.1
204,858 + PGA1_262p01850 0.73 +2.5
204,858 + PGA1_262p01850 0.73 -1.6
204,866 - PGA1_262p01850 0.74 +0.3
204,866 - PGA1_262p01850 0.74 +1.2
204,866 - PGA1_262p01850 0.74 +3.0
204,914 + PGA1_262p01850 0.80 -0.1
204,914 + PGA1_262p01850 0.80 -0.4
204,914 + PGA1_262p01850 0.80 +2.1
204,914 + PGA1_262p01850 0.80 +0.4
204,914 + PGA1_262p01850 0.80 -0.8
204,914 + PGA1_262p01850 0.80 +1.0
204,914 + PGA1_262p01850 0.80 -0.4
204,922 - PGA1_262p01850 0.81 +0.9
204,922 - PGA1_262p01850 0.81 +0.0
204,929 + PGA1_262p01850 0.82 +0.6
204,929 + PGA1_262p01850 0.82 +0.4
204,929 + PGA1_262p01850 0.82 +0.4
204,929 + PGA1_262p01850 0.82 -0.0
204,937 - PGA1_262p01850 0.83 -0.6
204,937 - PGA1_262p01850 0.83 +1.3
204,959 - PGA1_262p01850 0.85 +0.4
205,029 + +1.6
205,029 + +0.3
205,029 + -0.4
205,042 + +1.3
205,046 + -0.0
205,053 + -2.0
205,054 - -2.3
205,096 + -0.8
205,145 - -0.3
205,162 + -1.3
205,170 - +1.1

Or see this region's nucleotide sequence