Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01510

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01500 and PGA1_262p01510 overlap by 4 nucleotidesPGA1_262p01510 and PGA1_262p01520 are separated by 12 nucleotides PGA1_262p01500: PGA1_262p01500 - sarcosine oxidase subunit alpha, at 163,125 to 166,091 _262p01500 PGA1_262p01510: PGA1_262p01510 - sarcosine oxidase, delta subunit, at 166,088 to 166,396 _262p01510 PGA1_262p01520: PGA1_262p01520 - sarcosine oxidase 3 subunit beta, at 166,409 to 167,659 _262p01520 Position (kb) 166 167Strain fitness (log2 ratio) -1 0 1at 165.429 kb on + strand, within PGA1_262p01500at 165.690 kb on + strand, within PGA1_262p01500at 165.690 kb on + strand, within PGA1_262p01500at 165.698 kb on - strand, within PGA1_262p01500at 165.698 kb on - strand, within PGA1_262p01500at 165.905 kb on - strandat 165.952 kb on + strandat 165.952 kb on + strandat 166.158 kb on - strand, within PGA1_262p01510at 166.200 kb on - strand, within PGA1_262p01510at 166.200 kb on - strand, within PGA1_262p01510at 166.283 kb on - strand, within PGA1_262p01510at 166.402 kb on - strandat 166.554 kb on + strand, within PGA1_262p01520at 166.554 kb on + strand, within PGA1_262p01520at 166.758 kb on + strand, within PGA1_262p01520at 166.924 kb on - strand, within PGA1_262p01520at 166.947 kb on - strand, within PGA1_262p01520at 166.972 kb on + strand, within PGA1_262p01520at 167.015 kb on - strand, within PGA1_262p01520at 167.104 kb on - strand, within PGA1_262p01520at 167.216 kb on + strand, within PGA1_262p01520

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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165,429 + PGA1_262p01500 0.78 +0.6
165,690 + PGA1_262p01500 0.86 +0.4
165,690 + PGA1_262p01500 0.86 +0.4
165,698 - PGA1_262p01500 0.87 -0.1
165,698 - PGA1_262p01500 0.87 -0.7
165,905 - -0.5
165,952 + -0.9
165,952 + -0.8
166,158 - PGA1_262p01510 0.23 +0.9
166,200 - PGA1_262p01510 0.36 +1.3
166,200 - PGA1_262p01510 0.36 +0.3
166,283 - PGA1_262p01510 0.63 +0.0
166,402 - +0.4
166,554 + PGA1_262p01520 0.12 +1.1
166,554 + PGA1_262p01520 0.12 -0.7
166,758 + PGA1_262p01520 0.28 +0.1
166,924 - PGA1_262p01520 0.41 +1.3
166,947 - PGA1_262p01520 0.43 -1.0
166,972 + PGA1_262p01520 0.45 +0.1
167,015 - PGA1_262p01520 0.48 -0.7
167,104 - PGA1_262p01520 0.56 -0.1
167,216 + PGA1_262p01520 0.65 -0.9

Or see this region's nucleotide sequence