Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01460 and PGA1_262p01470 are separated by 65 nucleotides PGA1_262p01470 and PGA1_262p01480 overlap by 4 nucleotides
PGA1_262p01460: PGA1_262p01460 - aldehyde dehydrogenase, at 159,077 to 160,570
_262p01460
PGA1_262p01470: PGA1_262p01470 - transcriptional regulator, LysR family, at 160,636 to 161,532
_262p01470
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.871 kb on + strand, within PGA1_262p01460 at 159.927 kb on - strand, within PGA1_262p01460 at 159.936 kb on + strand, within PGA1_262p01460 at 159.989 kb on - strand, within PGA1_262p01460 at 160.235 kb on - strand, within PGA1_262p01460 at 160.241 kb on - strand, within PGA1_262p01460 at 160.269 kb on + strand, within PGA1_262p01460 at 160.277 kb on + strand, within PGA1_262p01460 at 160.277 kb on - strand, within PGA1_262p01460 at 160.407 kb on + strand, within PGA1_262p01460 at 160.415 kb on - strand, within PGA1_262p01460 at 160.521 kb on + strand at 160.534 kb on - strand at 160.569 kb on - strand at 160.929 kb on + strand, within PGA1_262p01470 at 160.949 kb on + strand, within PGA1_262p01470 at 161.027 kb on + strand, within PGA1_262p01470 at 161.091 kb on - strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.251 kb on - strand, within PGA1_262p01470 at 161.268 kb on + strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.300 kb on + strand, within PGA1_262p01470 at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.534 kb on - strand at 161.591 kb on - strand at 161.613 kb on - strand at 162.040 kb on + strand, within PGA1_262p01480 at 162.267 kb on - strand, within PGA1_262p01480 at 162.312 kb on - strand, within PGA1_262p01480 at 162.317 kb on - strand, within PGA1_262p01480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 159,871 + PGA1_262p01460 0.53 +0.3 159,871 + PGA1_262p01460 0.53 +0.7 159,871 + PGA1_262p01460 0.53 -0.1 159,927 - PGA1_262p01460 0.57 -1.4 159,936 + PGA1_262p01460 0.57 +0.8 159,989 - PGA1_262p01460 0.61 -0.9 160,235 - PGA1_262p01460 0.78 -0.2 160,241 - PGA1_262p01460 0.78 -2.0 160,269 + PGA1_262p01460 0.80 +0.8 160,277 + PGA1_262p01460 0.80 +0.4 160,277 - PGA1_262p01460 0.80 +0.5 160,407 + PGA1_262p01460 0.89 +1.0 160,415 - PGA1_262p01460 0.90 +1.6 160,521 + +0.9 160,534 - +0.5 160,569 - -0.6 160,929 + PGA1_262p01470 0.33 +0.2 160,949 + PGA1_262p01470 0.35 -0.2 161,027 + PGA1_262p01470 0.44 +1.2 161,091 - PGA1_262p01470 0.51 -0.4 161,129 + PGA1_262p01470 0.55 +0.9 161,129 + PGA1_262p01470 0.55 +1.5 161,251 - PGA1_262p01470 0.69 -1.5 161,268 + PGA1_262p01470 0.70 +2.3 161,276 - PGA1_262p01470 0.71 +0.8 161,276 - PGA1_262p01470 0.71 +0.7 161,300 + PGA1_262p01470 0.74 +0.4 161,457 + +0.5 161,457 + -0.8 161,457 + +0.4 161,457 + +0.3 161,457 + -1.2 161,534 - +2.1 161,591 - +0.2 161,613 - -0.6 162,040 + PGA1_262p01480 0.51 -0.4 162,267 - PGA1_262p01480 0.73 +0.7 162,312 - PGA1_262p01480 0.78 +0.6 162,317 - PGA1_262p01480 0.78 +1.2
Or see this region's nucleotide sequence