Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01310 and PGA1_262p01320 are separated by 47 nucleotides PGA1_262p01320 and PGA1_262p01330 overlap by 14 nucleotides PGA1_262p01330 and PGA1_262p01340 are separated by 81 nucleotides PGA1_262p01340 and PGA1_262p01350 are separated by 80 nucleotides
PGA1_262p01310: PGA1_262p01310 - putative flavin-containing monooxygenase, at 141,700 to 143,187
_262p01310
PGA1_262p01320: PGA1_262p01320 - Uncharacterized protein conserved in bacteria, at 143,235 to 143,936
_262p01320
PGA1_262p01330: PGA1_262p01330 - transcriptional regulator, MarR family, at 143,923 to 144,480
_262p01330
PGA1_262p01340: PGA1_262p01340 - hypothetical protein, at 144,562 to 145,311
_262p01340
PGA1_262p01350: PGA1_262p01350 - putative vanillate O-demethylase oxidoreductase, at 145,392 to 146,336
_262p01350
Position (kb) 143
144
145 Strain fitness (log2 ratio) -1
0
1 at 143.018 kb on - strand, within PGA1_262p01310 at 143.030 kb on - strand, within PGA1_262p01310 at 143.292 kb on - strand at 143.496 kb on - strand, within PGA1_262p01320 at 143.514 kb on + strand, within PGA1_262p01320 at 143.739 kb on + strand, within PGA1_262p01320 at 143.935 kb on + strand at 144.118 kb on + strand, within PGA1_262p01330 at 144.604 kb on - strand at 144.650 kb on + strand, within PGA1_262p01340 at 144.650 kb on + strand, within PGA1_262p01340 at 144.658 kb on - strand, within PGA1_262p01340 at 144.827 kb on + strand, within PGA1_262p01340 at 144.830 kb on - strand, within PGA1_262p01340 at 144.830 kb on - strand, within PGA1_262p01340 at 144.865 kb on - strand, within PGA1_262p01340 at 144.922 kb on + strand, within PGA1_262p01340 at 145.005 kb on - strand, within PGA1_262p01340 at 145.176 kb on - strand, within PGA1_262p01340 at 145.177 kb on - strand, within PGA1_262p01340 at 145.189 kb on + strand, within PGA1_262p01340 at 145.213 kb on - strand, within PGA1_262p01340
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 143,018 - PGA1_262p01310 0.89 +0.6 143,030 - PGA1_262p01310 0.89 +0.1 143,292 - +0.2 143,496 - PGA1_262p01320 0.37 -0.1 143,514 + PGA1_262p01320 0.40 +0.1 143,739 + PGA1_262p01320 0.72 +0.5 143,935 + +1.4 144,118 + PGA1_262p01330 0.35 +0.9 144,604 - -0.9 144,650 + PGA1_262p01340 0.12 -0.2 144,650 + PGA1_262p01340 0.12 +0.2 144,658 - PGA1_262p01340 0.13 +0.3 144,827 + PGA1_262p01340 0.35 -0.1 144,830 - PGA1_262p01340 0.36 +0.2 144,830 - PGA1_262p01340 0.36 +0.6 144,865 - PGA1_262p01340 0.40 +1.4 144,922 + PGA1_262p01340 0.48 -0.2 145,005 - PGA1_262p01340 0.59 +0.5 145,176 - PGA1_262p01340 0.82 -0.0 145,177 - PGA1_262p01340 0.82 +1.0 145,189 + PGA1_262p01340 0.84 -1.3 145,213 - PGA1_262p01340 0.87 +1.1
Or see this region's nucleotide sequence