Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01100 and PGA1_262p01110 are separated by 125 nucleotides PGA1_262p01110 and PGA1_262p01120 are separated by 78 nucleotides PGA1_262p01120 and PGA1_262p01130 are separated by 61 nucleotides PGA1_262p01130 and PGA1_262p01140 are separated by 225 nucleotides
PGA1_262p01100: PGA1_262p01100 - transposase, at 118,688 to 120,277
_262p01100
PGA1_262p01110: PGA1_262p01110 - hypothetical protein, at 120,403 to 120,828
_262p01110
PGA1_262p01120: PGA1_262p01120 - hypothetical protein, at 120,907 to 121,305
_262p01120
PGA1_262p01130: PGA1_262p01130 - hypothetical protein, at 121,367 to 122,032
_262p01130
PGA1_262p01140: PGA1_262p01140 - RTX toxins and related Ca2+-binding proteins, at 122,258 to 127,435
_262p01140
Position (kb)
120
121
122 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 120.400 kb on + strand at 120.521 kb on + strand, within PGA1_262p01110 at 120.539 kb on + strand, within PGA1_262p01110 at 120.559 kb on + strand, within PGA1_262p01110 at 120.567 kb on - strand, within PGA1_262p01110 at 120.567 kb on - strand, within PGA1_262p01110 at 120.618 kb on - strand, within PGA1_262p01110 at 120.650 kb on + strand, within PGA1_262p01110 at 120.658 kb on - strand, within PGA1_262p01110 at 120.660 kb on + strand, within PGA1_262p01110 at 120.667 kb on + strand, within PGA1_262p01110 at 120.764 kb on + strand, within PGA1_262p01110 at 120.889 kb on - strand at 120.913 kb on - strand at 121.021 kb on + strand, within PGA1_262p01120 at 121.029 kb on - strand, within PGA1_262p01120 at 121.093 kb on - strand, within PGA1_262p01120 at 121.266 kb on + strand at 121.351 kb on + strand at 121.446 kb on + strand, within PGA1_262p01130 at 121.584 kb on + strand, within PGA1_262p01130 at 121.592 kb on - strand, within PGA1_262p01130 at 121.765 kb on + strand, within PGA1_262p01130 at 121.773 kb on - strand, within PGA1_262p01130 at 121.990 kb on - strand at 122.052 kb on - strand at 122.096 kb on + strand at 122.101 kb on + strand at 122.125 kb on + strand at 122.133 kb on - strand at 122.198 kb on + strand at 122.287 kb on - strand at 122.288 kb on - strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.292 kb on + strand at 122.294 kb on + strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.300 kb on - strand at 122.305 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 120,400 + -0.1 120,521 + PGA1_262p01110 0.28 +0.5 120,539 + PGA1_262p01110 0.32 +0.9 120,559 + PGA1_262p01110 0.37 -0.7 120,567 - PGA1_262p01110 0.38 +1.2 120,567 - PGA1_262p01110 0.38 +0.0 120,618 - PGA1_262p01110 0.50 +0.7 120,650 + PGA1_262p01110 0.58 +0.8 120,658 - PGA1_262p01110 0.60 +1.1 120,660 + PGA1_262p01110 0.60 -0.8 120,667 + PGA1_262p01110 0.62 -2.0 120,764 + PGA1_262p01110 0.85 +0.9 120,889 - +1.2 120,913 - -0.1 121,021 + PGA1_262p01120 0.29 +1.1 121,029 - PGA1_262p01120 0.31 +1.0 121,093 - PGA1_262p01120 0.47 -0.0 121,266 + +0.3 121,351 + +0.8 121,446 + PGA1_262p01130 0.12 -1.5 121,584 + PGA1_262p01130 0.33 +0.0 121,592 - PGA1_262p01130 0.34 -1.9 121,765 + PGA1_262p01130 0.60 +0.1 121,773 - PGA1_262p01130 0.61 -1.3 121,990 - -0.0 122,052 - +1.2 122,096 + -0.1 122,101 + +0.6 122,125 + +0.3 122,133 - +0.5 122,198 + +1.9 122,287 - -0.3 122,288 - +0.1 122,292 + +0.4 122,292 + +1.5 122,292 + -1.9 122,292 + -0.6 122,292 + +1.5 122,294 + +0.5 122,300 - +0.6 122,300 - +0.9 122,300 - -2.8 122,300 - +0.5 122,300 - -0.7 122,300 - +0.2 122,300 - +0.6 122,300 - +0.0 122,300 - -0.4 122,300 - +0.9 122,300 - -0.2 122,300 - -0.2 122,300 - +1.1 122,305 - -0.3
Or see this region's nucleotide sequence