Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01050 and PGA1_262p01060 are separated by 117 nucleotides PGA1_262p01060 and PGA1_262p01070 are separated by 103 nucleotides PGA1_262p01070 and PGA1_262p01090 are separated by 374 nucleotides
PGA1_262p01050: PGA1_262p01050 - Hemolysin-type calcium-binding repeat (2 copies)., at 115,823 to 116,746
_262p01050
PGA1_262p01060: PGA1_262p01060 - Protein of unknown function (DUF995)., at 116,864 to 117,352
_262p01060
PGA1_262p01070: PGA1_262p01070 - tRNA-Arg, at 117,456 to 117,532
_262p01070
PGA1_262p01090: PGA1_262p01090 - putative transposase, at 117,907 to 118,668
_262p01090
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-1
0
1
2 at 115.912 kb on + strand at 115.938 kb on + strand, within PGA1_262p01050 at 115.946 kb on - strand, within PGA1_262p01050 at 115.948 kb on + strand, within PGA1_262p01050 at 115.956 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.090 kb on - strand, within PGA1_262p01050 at 116.114 kb on - strand, within PGA1_262p01050 at 116.137 kb on - strand, within PGA1_262p01050 at 116.191 kb on - strand, within PGA1_262p01050 at 116.250 kb on - strand, within PGA1_262p01050 at 116.331 kb on - strand, within PGA1_262p01050 at 116.342 kb on + strand, within PGA1_262p01050 at 116.371 kb on + strand, within PGA1_262p01050 at 116.398 kb on + strand, within PGA1_262p01050 at 116.406 kb on - strand, within PGA1_262p01050 at 116.406 kb on - strand, within PGA1_262p01050 at 116.622 kb on + strand, within PGA1_262p01050 at 116.622 kb on + strand, within PGA1_262p01050 at 116.732 kb on - strand at 116.839 kb on + strand at 116.839 kb on + strand at 116.839 kb on + strand at 116.847 kb on - strand at 116.849 kb on + strand at 116.895 kb on + strand at 116.994 kb on - strand, within PGA1_262p01060 at 117.169 kb on - strand, within PGA1_262p01060 at 117.254 kb on - strand, within PGA1_262p01060 at 117.288 kb on - strand, within PGA1_262p01060 at 117.295 kb on - strand, within PGA1_262p01060 at 117.295 kb on - strand, within PGA1_262p01060 at 117.331 kb on - strand at 117.647 kb on + strand at 117.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 115,912 + -0.8 115,938 + PGA1_262p01050 0.12 +0.4 115,946 - PGA1_262p01050 0.13 +0.1 115,948 + PGA1_262p01050 0.14 +1.7 115,956 - PGA1_262p01050 0.14 +0.3 116,090 - PGA1_262p01050 0.29 +1.0 116,090 - PGA1_262p01050 0.29 +0.2 116,114 - PGA1_262p01050 0.31 +1.0 116,137 - PGA1_262p01050 0.34 -0.8 116,191 - PGA1_262p01050 0.40 -0.3 116,250 - PGA1_262p01050 0.46 -0.4 116,331 - PGA1_262p01050 0.55 +0.7 116,342 + PGA1_262p01050 0.56 +0.4 116,371 + PGA1_262p01050 0.59 -0.1 116,398 + PGA1_262p01050 0.62 +0.8 116,406 - PGA1_262p01050 0.63 +1.1 116,406 - PGA1_262p01050 0.63 +0.1 116,622 + PGA1_262p01050 0.86 +0.1 116,622 + PGA1_262p01050 0.86 +0.6 116,732 - +0.0 116,839 + +0.5 116,839 + -0.2 116,839 + +1.9 116,847 - +0.8 116,849 + +0.3 116,895 + -1.5 116,994 - PGA1_262p01060 0.27 -0.6 117,169 - PGA1_262p01060 0.62 +0.4 117,254 - PGA1_262p01060 0.80 +2.2 117,288 - PGA1_262p01060 0.87 +0.8 117,295 - PGA1_262p01060 0.88 -0.3 117,295 - PGA1_262p01060 0.88 +0.7 117,331 - -0.1 117,647 + -0.8 117,746 - -0.0
Or see this region's nucleotide sequence