Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01060

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01050 and PGA1_262p01060 are separated by 117 nucleotidesPGA1_262p01060 and PGA1_262p01070 are separated by 103 nucleotidesPGA1_262p01070 and PGA1_262p01090 are separated by 374 nucleotides PGA1_262p01050: PGA1_262p01050 - Hemolysin-type calcium-binding repeat (2 copies)., at 115,823 to 116,746 _262p01050 PGA1_262p01060: PGA1_262p01060 - Protein of unknown function (DUF995)., at 116,864 to 117,352 _262p01060 PGA1_262p01070: PGA1_262p01070 - tRNA-Arg, at 117,456 to 117,532 _262p01070 PGA1_262p01090: PGA1_262p01090 - putative transposase, at 117,907 to 118,668 _262p01090 Position (kb) 116 117 118Strain fitness (log2 ratio) -1 0 1 2at 115.912 kb on + strandat 115.938 kb on + strand, within PGA1_262p01050at 115.946 kb on - strand, within PGA1_262p01050at 115.948 kb on + strand, within PGA1_262p01050at 115.956 kb on - strand, within PGA1_262p01050at 116.090 kb on - strand, within PGA1_262p01050at 116.090 kb on - strand, within PGA1_262p01050at 116.114 kb on - strand, within PGA1_262p01050at 116.137 kb on - strand, within PGA1_262p01050at 116.191 kb on - strand, within PGA1_262p01050at 116.250 kb on - strand, within PGA1_262p01050at 116.331 kb on - strand, within PGA1_262p01050at 116.342 kb on + strand, within PGA1_262p01050at 116.371 kb on + strand, within PGA1_262p01050at 116.398 kb on + strand, within PGA1_262p01050at 116.406 kb on - strand, within PGA1_262p01050at 116.406 kb on - strand, within PGA1_262p01050at 116.622 kb on + strand, within PGA1_262p01050at 116.622 kb on + strand, within PGA1_262p01050at 116.732 kb on - strandat 116.839 kb on + strandat 116.839 kb on + strandat 116.839 kb on + strandat 116.847 kb on - strandat 116.849 kb on + strandat 116.895 kb on + strandat 116.994 kb on - strand, within PGA1_262p01060at 117.169 kb on - strand, within PGA1_262p01060at 117.254 kb on - strand, within PGA1_262p01060at 117.288 kb on - strand, within PGA1_262p01060at 117.295 kb on - strand, within PGA1_262p01060at 117.295 kb on - strand, within PGA1_262p01060at 117.331 kb on - strandat 117.647 kb on + strandat 117.746 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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115,912 + -0.8
115,938 + PGA1_262p01050 0.12 +0.4
115,946 - PGA1_262p01050 0.13 +0.1
115,948 + PGA1_262p01050 0.14 +1.7
115,956 - PGA1_262p01050 0.14 +0.3
116,090 - PGA1_262p01050 0.29 +1.0
116,090 - PGA1_262p01050 0.29 +0.2
116,114 - PGA1_262p01050 0.31 +1.0
116,137 - PGA1_262p01050 0.34 -0.8
116,191 - PGA1_262p01050 0.40 -0.3
116,250 - PGA1_262p01050 0.46 -0.4
116,331 - PGA1_262p01050 0.55 +0.7
116,342 + PGA1_262p01050 0.56 +0.4
116,371 + PGA1_262p01050 0.59 -0.1
116,398 + PGA1_262p01050 0.62 +0.8
116,406 - PGA1_262p01050 0.63 +1.1
116,406 - PGA1_262p01050 0.63 +0.1
116,622 + PGA1_262p01050 0.86 +0.1
116,622 + PGA1_262p01050 0.86 +0.6
116,732 - +0.0
116,839 + +0.5
116,839 + -0.2
116,839 + +1.9
116,847 - +0.8
116,849 + +0.3
116,895 + -1.5
116,994 - PGA1_262p01060 0.27 -0.6
117,169 - PGA1_262p01060 0.62 +0.4
117,254 - PGA1_262p01060 0.80 +2.2
117,288 - PGA1_262p01060 0.87 +0.8
117,295 - PGA1_262p01060 0.88 -0.3
117,295 - PGA1_262p01060 0.88 +0.7
117,331 - -0.1
117,647 + -0.8
117,746 - -0.0

Or see this region's nucleotide sequence