Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00770

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00750 and PGA1_262p00760 are separated by 84 nucleotidesPGA1_262p00760 and PGA1_262p00770 are separated by 69 nucleotidesPGA1_262p00770 and PGA1_262p00780 are separated by 4 nucleotides PGA1_262p00750: PGA1_262p00750 - Threonine dehydratase, at 84,428 to 85,453 _262p00750 PGA1_262p00760: PGA1_262p00760 - transcriptional regulator, AsnC family, at 85,538 to 86,011 _262p00760 PGA1_262p00770: PGA1_262p00770 - putative lytic murein transglycosylase, at 86,081 to 87,325 _262p00770 PGA1_262p00780: PGA1_262p00780 - NAD dependent epimerase/dehydratase, at 87,330 to 88,439 _262p00780 Position (kb) 86 87 88Strain fitness (log2 ratio) -1 0 1 2 3at 85.273 kb on + strand, within PGA1_262p00750at 85.390 kb on + strandat 85.392 kb on + strandat 85.392 kb on + strandat 85.392 kb on + strandat 85.392 kb on + strandat 85.400 kb on - strandat 85.620 kb on - strand, within PGA1_262p00760at 85.620 kb on - strand, within PGA1_262p00760at 85.718 kb on + strand, within PGA1_262p00760at 85.725 kb on - strand, within PGA1_262p00760at 85.831 kb on - strand, within PGA1_262p00760at 85.833 kb on + strand, within PGA1_262p00760at 85.883 kb on + strand, within PGA1_262p00760at 85.953 kb on + strand, within PGA1_262p00760at 86.066 kb on + strandat 86.512 kb on + strand, within PGA1_262p00770at 86.556 kb on + strand, within PGA1_262p00770at 86.635 kb on + strand, within PGA1_262p00770at 86.906 kb on - strand, within PGA1_262p00770at 86.928 kb on - strand, within PGA1_262p00770at 87.234 kb on - strandat 87.306 kb on + strandat 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.460 kb on - strand, within PGA1_262p00780at 87.520 kb on + strand, within PGA1_262p00780at 87.596 kb on + strand, within PGA1_262p00780at 87.598 kb on + strand, within PGA1_262p00780at 87.641 kb on + strand, within PGA1_262p00780at 87.746 kb on + strand, within PGA1_262p00780at 87.823 kb on + strand, within PGA1_262p00780at 87.833 kb on + strand, within PGA1_262p00780at 87.911 kb on + strand, within PGA1_262p00780at 87.954 kb on + strand, within PGA1_262p00780at 87.973 kb on + strand, within PGA1_262p00780at 88.026 kb on - strand, within PGA1_262p00780at 88.026 kb on - strand, within PGA1_262p00780at 88.052 kb on + strand, within PGA1_262p00780

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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85,273 + PGA1_262p00750 0.82 +0.5
85,390 + +0.2
85,392 + +0.2
85,392 + -0.4
85,392 + +1.1
85,392 + -0.1
85,400 - -0.0
85,620 - PGA1_262p00760 0.17 +0.5
85,620 - PGA1_262p00760 0.17 -0.1
85,718 + PGA1_262p00760 0.38 +0.4
85,725 - PGA1_262p00760 0.39 +1.4
85,831 - PGA1_262p00760 0.62 +0.2
85,833 + PGA1_262p00760 0.62 -1.7
85,883 + PGA1_262p00760 0.73 +0.1
85,953 + PGA1_262p00760 0.88 -0.2
86,066 + +3.1
86,512 + PGA1_262p00770 0.35 +2.5
86,556 + PGA1_262p00770 0.38 -0.1
86,635 + PGA1_262p00770 0.44 +1.1
86,906 - PGA1_262p00770 0.66 +0.2
86,928 - PGA1_262p00770 0.68 +2.0
87,234 - +0.5
87,306 + +0.2
87,452 + PGA1_262p00780 0.11 +0.7
87,452 + PGA1_262p00780 0.11 +1.1
87,452 + PGA1_262p00780 0.11 +1.5
87,452 + PGA1_262p00780 0.11 -0.3
87,452 + PGA1_262p00780 0.11 +0.7
87,460 - PGA1_262p00780 0.12 -1.1
87,520 + PGA1_262p00780 0.17 +1.7
87,596 + PGA1_262p00780 0.24 +0.4
87,598 + PGA1_262p00780 0.24 +0.8
87,641 + PGA1_262p00780 0.28 +0.0
87,746 + PGA1_262p00780 0.37 +0.9
87,823 + PGA1_262p00780 0.44 -1.0
87,833 + PGA1_262p00780 0.45 -1.1
87,911 + PGA1_262p00780 0.52 +0.6
87,954 + PGA1_262p00780 0.56 +0.7
87,973 + PGA1_262p00780 0.58 -0.4
88,026 - PGA1_262p00780 0.63 +0.5
88,026 - PGA1_262p00780 0.63 -0.1
88,052 + PGA1_262p00780 0.65 +1.3

Or see this region's nucleotide sequence