Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00740 and PGA1_262p00750 overlap by 8 nucleotides PGA1_262p00750 and PGA1_262p00760 are separated by 84 nucleotides PGA1_262p00760 and PGA1_262p00770 are separated by 69 nucleotides
PGA1_262p00740: PGA1_262p00740 - putative peptidase, family M20/M25/M40, at 83,308 to 84,435
_262p00740
PGA1_262p00750: PGA1_262p00750 - Threonine dehydratase, at 84,428 to 85,453
_262p00750
PGA1_262p00760: PGA1_262p00760 - transcriptional regulator, AsnC family, at 85,538 to 86,011
_262p00760
PGA1_262p00770: PGA1_262p00770 - putative lytic murein transglycosylase, at 86,081 to 87,325
_262p00770
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1
2
3 at 83.489 kb on + strand, within PGA1_262p00740 at 83.489 kb on + strand, within PGA1_262p00740 at 83.491 kb on + strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.497 kb on - strand, within PGA1_262p00740 at 83.547 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.588 kb on - strand, within PGA1_262p00740 at 83.617 kb on - strand, within PGA1_262p00740 at 83.660 kb on - strand, within PGA1_262p00740 at 83.869 kb on - strand, within PGA1_262p00740 at 83.971 kb on + strand, within PGA1_262p00740 at 84.125 kb on - strand, within PGA1_262p00740 at 84.189 kb on - strand, within PGA1_262p00740 at 84.251 kb on - strand, within PGA1_262p00740 at 84.291 kb on - strand, within PGA1_262p00740 at 84.331 kb on + strand at 84.569 kb on - strand, within PGA1_262p00750 at 84.629 kb on - strand, within PGA1_262p00750 at 84.738 kb on - strand, within PGA1_262p00750 at 84.813 kb on + strand, within PGA1_262p00750 at 84.915 kb on - strand, within PGA1_262p00750 at 85.055 kb on - strand, within PGA1_262p00750 at 85.273 kb on + strand, within PGA1_262p00750 at 85.390 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.392 kb on + strand at 85.400 kb on - strand at 85.620 kb on - strand, within PGA1_262p00760 at 85.620 kb on - strand, within PGA1_262p00760 at 85.718 kb on + strand, within PGA1_262p00760 at 85.725 kb on - strand, within PGA1_262p00760 at 85.831 kb on - strand, within PGA1_262p00760 at 85.833 kb on + strand, within PGA1_262p00760 at 85.883 kb on + strand, within PGA1_262p00760 at 85.953 kb on + strand, within PGA1_262p00760 at 86.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 83,489 + PGA1_262p00740 0.16 +0.4 83,489 + PGA1_262p00740 0.16 +1.2 83,491 + PGA1_262p00740 0.16 -1.5 83,497 - PGA1_262p00740 0.17 -0.6 83,497 - PGA1_262p00740 0.17 +0.1 83,547 - PGA1_262p00740 0.21 +0.6 83,588 - PGA1_262p00740 0.25 +1.5 83,588 - PGA1_262p00740 0.25 +0.7 83,617 - PGA1_262p00740 0.27 +0.2 83,660 - PGA1_262p00740 0.31 +0.3 83,869 - PGA1_262p00740 0.50 +0.1 83,971 + PGA1_262p00740 0.59 -1.5 84,125 - PGA1_262p00740 0.72 +0.4 84,189 - PGA1_262p00740 0.78 +0.6 84,251 - PGA1_262p00740 0.84 +0.9 84,291 - PGA1_262p00740 0.87 -0.8 84,331 + +0.8 84,569 - PGA1_262p00750 0.14 +1.3 84,629 - PGA1_262p00750 0.20 +0.6 84,738 - PGA1_262p00750 0.30 +0.8 84,813 + PGA1_262p00750 0.38 +0.3 84,915 - PGA1_262p00750 0.47 +0.9 85,055 - PGA1_262p00750 0.61 +0.1 85,273 + PGA1_262p00750 0.82 +0.5 85,390 + +0.2 85,392 + +0.2 85,392 + -0.4 85,392 + +1.1 85,392 + -0.1 85,400 - -0.0 85,620 - PGA1_262p00760 0.17 +0.5 85,620 - PGA1_262p00760 0.17 -0.1 85,718 + PGA1_262p00760 0.38 +0.4 85,725 - PGA1_262p00760 0.39 +1.4 85,831 - PGA1_262p00760 0.62 +0.2 85,833 + PGA1_262p00760 0.62 -1.7 85,883 + PGA1_262p00760 0.73 +0.1 85,953 + PGA1_262p00760 0.88 -0.2 86,066 + +3.1
Or see this region's nucleotide sequence