Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00610

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00600 and PGA1_262p00610 are separated by 127 nucleotidesPGA1_262p00610 and PGA1_262p00620 are separated by 132 nucleotidesPGA1_262p00620 and PGA1_262p00630 are separated by 81 nucleotides PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983 _262p00600 PGA1_262p00610: PGA1_262p00610 - metallophosphoesterase, at 71,111 to 71,839 _262p00610 PGA1_262p00620: PGA1_262p00620 - hypothetical protein, at 71,972 to 72,625 _262p00620 PGA1_262p00630: PGA1_262p00630 - Predicted membrane protein, at 72,707 to 73,756 _262p00630 Position (kb) 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 70.181 kb on + strand, within PGA1_262p00600at 70.210 kb on + strand, within PGA1_262p00600at 70.238 kb on - strand, within PGA1_262p00600at 70.298 kb on + strand, within PGA1_262p00600at 70.349 kb on - strand, within PGA1_262p00600at 70.405 kb on - strand, within PGA1_262p00600at 70.557 kb on + strand, within PGA1_262p00600at 70.557 kb on + strand, within PGA1_262p00600at 70.629 kb on + strand, within PGA1_262p00600at 70.674 kb on - strand, within PGA1_262p00600at 70.705 kb on + strand, within PGA1_262p00600at 70.835 kb on - strandat 70.874 kb on + strandat 71.025 kb on + strandat 71.037 kb on + strandat 71.037 kb on + strandat 71.037 kb on + strandat 71.043 kb on - strandat 71.047 kb on + strandat 71.092 kb on - strandat 71.169 kb on + strandat 71.169 kb on + strandat 71.177 kb on - strandat 71.302 kb on - strand, within PGA1_262p00610at 71.448 kb on + strand, within PGA1_262p00610at 71.513 kb on - strand, within PGA1_262p00610at 71.650 kb on + strand, within PGA1_262p00610at 72.183 kb on - strand, within PGA1_262p00620at 72.218 kb on - strand, within PGA1_262p00620at 72.237 kb on - strand, within PGA1_262p00620at 72.271 kb on + strand, within PGA1_262p00620at 72.361 kb on + strand, within PGA1_262p00620at 72.369 kb on - strand, within PGA1_262p00620at 72.502 kb on + strand, within PGA1_262p00620at 72.502 kb on + strand, within PGA1_262p00620at 72.510 kb on - strand, within PGA1_262p00620at 72.531 kb on + strand, within PGA1_262p00620at 72.536 kb on + strand, within PGA1_262p00620at 72.549 kb on + strand, within PGA1_262p00620at 72.556 kb on + strand, within PGA1_262p00620at 72.591 kb on + strandat 72.792 kb on + strandat 72.794 kb on - strandat 72.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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70,181 + PGA1_262p00600 0.62 +0.5
70,210 + PGA1_262p00600 0.64 -0.9
70,238 - PGA1_262p00600 0.65 -1.2
70,298 + PGA1_262p00600 0.68 -0.6
70,349 - PGA1_262p00600 0.70 -1.0
70,405 - PGA1_262p00600 0.73 +1.5
70,557 + PGA1_262p00600 0.80 -0.7
70,557 + PGA1_262p00600 0.80 -0.5
70,629 + PGA1_262p00600 0.83 -1.0
70,674 - PGA1_262p00600 0.85 +0.1
70,705 + PGA1_262p00600 0.87 -0.3
70,835 - -0.6
70,874 + -0.3
71,025 + -0.0
71,037 + +2.3
71,037 + +1.4
71,037 + +1.1
71,043 - -0.6
71,047 + +0.6
71,092 - +0.5
71,169 + -0.1
71,169 + +0.4
71,177 - -0.0
71,302 - PGA1_262p00610 0.26 +0.1
71,448 + PGA1_262p00610 0.46 +1.4
71,513 - PGA1_262p00610 0.55 -0.8
71,650 + PGA1_262p00610 0.74 +1.1
72,183 - PGA1_262p00620 0.32 +0.6
72,218 - PGA1_262p00620 0.38 +0.3
72,237 - PGA1_262p00620 0.41 +0.5
72,271 + PGA1_262p00620 0.46 +1.0
72,361 + PGA1_262p00620 0.59 -0.2
72,369 - PGA1_262p00620 0.61 -0.0
72,502 + PGA1_262p00620 0.81 +0.0
72,502 + PGA1_262p00620 0.81 +1.4
72,510 - PGA1_262p00620 0.82 +0.4
72,531 + PGA1_262p00620 0.85 -2.6
72,536 + PGA1_262p00620 0.86 +1.6
72,549 + PGA1_262p00620 0.88 +0.6
72,556 + PGA1_262p00620 0.89 +1.1
72,591 + -0.7
72,792 + +0.3
72,794 - +0.1
72,805 - +0.3

Or see this region's nucleotide sequence