Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00600 and PGA1_262p00610 are separated by 127 nucleotides PGA1_262p00610 and PGA1_262p00620 are separated by 132 nucleotides PGA1_262p00620 and PGA1_262p00630 are separated by 81 nucleotides
PGA1_262p00600: PGA1_262p00600 - Bacterial putative lipoprotein (DUF940)., at 68,854 to 70,983
_262p00600
PGA1_262p00610: PGA1_262p00610 - metallophosphoesterase, at 71,111 to 71,839
_262p00610
PGA1_262p00620: PGA1_262p00620 - hypothetical protein, at 71,972 to 72,625
_262p00620
PGA1_262p00630: PGA1_262p00630 - Predicted membrane protein, at 72,707 to 73,756
_262p00630
Position (kb)
71
72 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 70.181 kb on + strand, within PGA1_262p00600 at 70.210 kb on + strand, within PGA1_262p00600 at 70.238 kb on - strand, within PGA1_262p00600 at 70.298 kb on + strand, within PGA1_262p00600 at 70.349 kb on - strand, within PGA1_262p00600 at 70.405 kb on - strand, within PGA1_262p00600 at 70.557 kb on + strand, within PGA1_262p00600 at 70.557 kb on + strand, within PGA1_262p00600 at 70.629 kb on + strand, within PGA1_262p00600 at 70.674 kb on - strand, within PGA1_262p00600 at 70.705 kb on + strand, within PGA1_262p00600 at 70.835 kb on - strand at 70.874 kb on + strand at 71.025 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.037 kb on + strand at 71.043 kb on - strand at 71.047 kb on + strand at 71.092 kb on - strand at 71.169 kb on + strand at 71.169 kb on + strand at 71.177 kb on - strand at 71.302 kb on - strand, within PGA1_262p00610 at 71.448 kb on + strand, within PGA1_262p00610 at 71.513 kb on - strand, within PGA1_262p00610 at 71.650 kb on + strand, within PGA1_262p00610 at 72.183 kb on - strand, within PGA1_262p00620 at 72.218 kb on - strand, within PGA1_262p00620 at 72.237 kb on - strand, within PGA1_262p00620 at 72.271 kb on + strand, within PGA1_262p00620 at 72.361 kb on + strand, within PGA1_262p00620 at 72.369 kb on - strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.502 kb on + strand, within PGA1_262p00620 at 72.510 kb on - strand, within PGA1_262p00620 at 72.531 kb on + strand, within PGA1_262p00620 at 72.536 kb on + strand, within PGA1_262p00620 at 72.549 kb on + strand, within PGA1_262p00620 at 72.556 kb on + strand, within PGA1_262p00620 at 72.591 kb on + strand at 72.792 kb on + strand at 72.794 kb on - strand at 72.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 70,181 + PGA1_262p00600 0.62 +0.5 70,210 + PGA1_262p00600 0.64 -0.9 70,238 - PGA1_262p00600 0.65 -1.2 70,298 + PGA1_262p00600 0.68 -0.6 70,349 - PGA1_262p00600 0.70 -1.0 70,405 - PGA1_262p00600 0.73 +1.5 70,557 + PGA1_262p00600 0.80 -0.7 70,557 + PGA1_262p00600 0.80 -0.5 70,629 + PGA1_262p00600 0.83 -1.0 70,674 - PGA1_262p00600 0.85 +0.1 70,705 + PGA1_262p00600 0.87 -0.3 70,835 - -0.6 70,874 + -0.3 71,025 + -0.0 71,037 + +2.3 71,037 + +1.4 71,037 + +1.1 71,043 - -0.6 71,047 + +0.6 71,092 - +0.5 71,169 + -0.1 71,169 + +0.4 71,177 - -0.0 71,302 - PGA1_262p00610 0.26 +0.1 71,448 + PGA1_262p00610 0.46 +1.4 71,513 - PGA1_262p00610 0.55 -0.8 71,650 + PGA1_262p00610 0.74 +1.1 72,183 - PGA1_262p00620 0.32 +0.6 72,218 - PGA1_262p00620 0.38 +0.3 72,237 - PGA1_262p00620 0.41 +0.5 72,271 + PGA1_262p00620 0.46 +1.0 72,361 + PGA1_262p00620 0.59 -0.2 72,369 - PGA1_262p00620 0.61 -0.0 72,502 + PGA1_262p00620 0.81 +0.0 72,502 + PGA1_262p00620 0.81 +1.4 72,510 - PGA1_262p00620 0.82 +0.4 72,531 + PGA1_262p00620 0.85 -2.6 72,536 + PGA1_262p00620 0.86 +1.6 72,549 + PGA1_262p00620 0.88 +0.6 72,556 + PGA1_262p00620 0.89 +1.1 72,591 + -0.7 72,792 + +0.3 72,794 - +0.1 72,805 - +0.3
Or see this region's nucleotide sequence