Experiment: m.b. Chloramphenicol 0.00002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35120 and PGA1_c35130 are separated by 129 nucleotides PGA1_c35130 and PGA1_c35140 are separated by 405 nucleotides
PGA1_c35120: PGA1_c35120 - transcription termination factor Rho, at 3,685,108 to 3,686,379
_c35120
PGA1_c35130: PGA1_c35130 - Predicted membrane protein, at 3,686,509 to 3,686,964
_c35130
PGA1_c35140: PGA1_c35140 - Maf-like protein, at 3,687,370 to 3,687,969
_c35140
Position (kb)
3686
3687 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3686.482 kb on - strand at 3686.973 kb on - strand at 3687.165 kb on + strand at 3687.166 kb on + strand at 3687.166 kb on + strand at 3687.299 kb on - strand at 3687.338 kb on - strand at 3687.347 kb on + strand at 3687.347 kb on + strand at 3687.355 kb on - strand at 3687.371 kb on + strand at 3687.371 kb on + strand at 3687.376 kb on + strand at 3687.379 kb on - strand at 3687.385 kb on + strand at 3687.385 kb on + strand at 3687.457 kb on + strand, within PGA1_c35140 at 3687.550 kb on + strand, within PGA1_c35140 at 3687.568 kb on + strand, within PGA1_c35140 at 3687.578 kb on - strand, within PGA1_c35140 at 3687.583 kb on + strand, within PGA1_c35140 at 3687.591 kb on - strand, within PGA1_c35140 at 3687.593 kb on + strand, within PGA1_c35140 at 3687.593 kb on + strand, within PGA1_c35140 at 3687.601 kb on - strand, within PGA1_c35140 at 3687.601 kb on - strand, within PGA1_c35140 at 3687.663 kb on + strand, within PGA1_c35140 at 3687.663 kb on + strand, within PGA1_c35140 at 3687.663 kb on + strand, within PGA1_c35140 at 3687.663 kb on + strand, within PGA1_c35140 at 3687.663 kb on + strand, within PGA1_c35140 at 3687.663 kb on + strand, within PGA1_c35140 at 3687.671 kb on - strand, within PGA1_c35140 at 3687.671 kb on - strand, within PGA1_c35140 at 3687.671 kb on - strand, within PGA1_c35140 at 3687.671 kb on - strand, within PGA1_c35140 at 3687.787 kb on + strand, within PGA1_c35140 at 3687.795 kb on + strand, within PGA1_c35140 at 3687.797 kb on + strand, within PGA1_c35140 at 3687.805 kb on - strand, within PGA1_c35140 at 3687.805 kb on - strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.821 kb on + strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.829 kb on - strand, within PGA1_c35140 at 3687.857 kb on - strand, within PGA1_c35140 at 3687.865 kb on - strand, within PGA1_c35140 at 3687.890 kb on - strand, within PGA1_c35140 at 3687.904 kb on - strand, within PGA1_c35140 at 3687.904 kb on - strand, within PGA1_c35140 at 3687.904 kb on - strand, within PGA1_c35140 at 3687.936 kb on - strand at 3687.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml remove 3,686,482 - -1.7 3,686,973 - -2.4 3,687,165 + +0.9 3,687,166 + +0.5 3,687,166 + +0.4 3,687,299 - +0.3 3,687,338 - +2.5 3,687,347 + +0.8 3,687,347 + -0.2 3,687,355 - +0.8 3,687,371 + +0.2 3,687,371 + +0.0 3,687,376 + -0.0 3,687,379 - -0.7 3,687,385 + -0.2 3,687,385 + -2.3 3,687,457 + PGA1_c35140 0.14 -0.1 3,687,550 + PGA1_c35140 0.30 -2.0 3,687,568 + PGA1_c35140 0.33 -0.2 3,687,578 - PGA1_c35140 0.35 +0.6 3,687,583 + PGA1_c35140 0.35 -0.2 3,687,591 - PGA1_c35140 0.37 +0.6 3,687,593 + PGA1_c35140 0.37 -0.3 3,687,593 + PGA1_c35140 0.37 -1.6 3,687,601 - PGA1_c35140 0.39 -1.4 3,687,601 - PGA1_c35140 0.39 +0.3 3,687,663 + PGA1_c35140 0.49 -0.3 3,687,663 + PGA1_c35140 0.49 +0.9 3,687,663 + PGA1_c35140 0.49 +0.3 3,687,663 + PGA1_c35140 0.49 -0.7 3,687,663 + PGA1_c35140 0.49 +0.5 3,687,663 + PGA1_c35140 0.49 +0.5 3,687,671 - PGA1_c35140 0.50 -0.3 3,687,671 - PGA1_c35140 0.50 -1.6 3,687,671 - PGA1_c35140 0.50 -1.0 3,687,671 - PGA1_c35140 0.50 -0.2 3,687,787 + PGA1_c35140 0.69 -0.2 3,687,795 + PGA1_c35140 0.71 -0.9 3,687,797 + PGA1_c35140 0.71 +0.0 3,687,805 - PGA1_c35140 0.72 +1.3 3,687,805 - PGA1_c35140 0.72 +0.3 3,687,821 + PGA1_c35140 0.75 +0.3 3,687,821 + PGA1_c35140 0.75 +0.4 3,687,821 + PGA1_c35140 0.75 -2.1 3,687,821 + PGA1_c35140 0.75 +0.1 3,687,829 - PGA1_c35140 0.77 -0.2 3,687,829 - PGA1_c35140 0.77 +1.0 3,687,829 - PGA1_c35140 0.77 -0.4 3,687,829 - PGA1_c35140 0.77 -0.2 3,687,857 - PGA1_c35140 0.81 -0.1 3,687,865 - PGA1_c35140 0.82 +0.5 3,687,890 - PGA1_c35140 0.87 +0.4 3,687,904 - PGA1_c35140 0.89 -0.2 3,687,904 - PGA1_c35140 0.89 -1.5 3,687,904 - PGA1_c35140 0.89 +0.2 3,687,936 - +1.4 3,687,938 + -0.1
Or see this region's nucleotide sequence