Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34140

Experiment: m.b. Chloramphenicol 0.00002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34120 and PGA1_c34130 overlap by 4 nucleotidesPGA1_c34130 and PGA1_c34140 are separated by 81 nucleotidesPGA1_c34140 and PGA1_c34150 overlap by 4 nucleotidesPGA1_c34150 and PGA1_c34160 are separated by 3 nucleotides PGA1_c34120: PGA1_c34120 - HTH-type transcriptional regulator PetP, at 3,575,895 to 3,576,407 _c34120 PGA1_c34130: PGA1_c34130 - protein PetR, at 3,576,404 to 3,577,105 _c34130 PGA1_c34140: PGA1_c34140 - histone deacetylase, at 3,577,187 to 3,578,113 _c34140 PGA1_c34150: PGA1_c34150 - exodeoxyribonuclease VII, small subunit, at 3,578,110 to 3,578,367 _c34150 PGA1_c34160: PGA1_c34160 - geranyltranstransferase IspA, at 3,578,371 to 3,579,270 _c34160 Position (kb) 3577 3578 3579Strain fitness (log2 ratio) -1 0 1 2 3at 3576.224 kb on + strand, within PGA1_c34120at 3576.292 kb on - strand, within PGA1_c34120at 3576.302 kb on - strand, within PGA1_c34120at 3577.113 kb on - strandat 3577.181 kb on + strandat 3577.191 kb on + strandat 3577.194 kb on - strandat 3577.204 kb on - strandat 3577.243 kb on - strandat 3577.243 kb on - strandat 3577.284 kb on + strand, within PGA1_c34140at 3577.298 kb on + strand, within PGA1_c34140at 3577.333 kb on + strand, within PGA1_c34140at 3577.398 kb on - strand, within PGA1_c34140at 3577.459 kb on + strand, within PGA1_c34140at 3577.470 kb on + strand, within PGA1_c34140at 3577.470 kb on + strand, within PGA1_c34140at 3577.478 kb on - strand, within PGA1_c34140at 3577.478 kb on - strand, within PGA1_c34140at 3577.499 kb on - strand, within PGA1_c34140at 3577.519 kb on - strand, within PGA1_c34140at 3577.629 kb on - strand, within PGA1_c34140at 3577.631 kb on + strand, within PGA1_c34140at 3577.631 kb on + strand, within PGA1_c34140at 3577.787 kb on - strand, within PGA1_c34140at 3577.831 kb on + strand, within PGA1_c34140at 3577.839 kb on - strand, within PGA1_c34140at 3577.839 kb on - strand, within PGA1_c34140at 3577.858 kb on - strand, within PGA1_c34140at 3577.927 kb on - strand, within PGA1_c34140at 3577.998 kb on + strand, within PGA1_c34140at 3578.006 kb on - strand, within PGA1_c34140at 3578.079 kb on - strandat 3578.153 kb on + strand, within PGA1_c34150at 3578.153 kb on + strand, within PGA1_c34150at 3578.171 kb on - strand, within PGA1_c34150at 3578.400 kb on + strandat 3578.650 kb on + strand, within PGA1_c34160at 3578.803 kb on + strand, within PGA1_c34160at 3578.834 kb on - strand, within PGA1_c34160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloramphenicol 0.00002 mg/ml
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3,576,224 + PGA1_c34120 0.64 +3.7
3,576,292 - PGA1_c34120 0.77 -0.9
3,576,302 - PGA1_c34120 0.79 +0.7
3,577,113 - -0.1
3,577,181 + +1.1
3,577,191 + -0.1
3,577,194 - -1.0
3,577,204 - +2.0
3,577,243 - +0.3
3,577,243 - -1.2
3,577,284 + PGA1_c34140 0.10 +0.9
3,577,298 + PGA1_c34140 0.12 -0.1
3,577,333 + PGA1_c34140 0.16 +0.9
3,577,398 - PGA1_c34140 0.23 +1.7
3,577,459 + PGA1_c34140 0.29 +0.5
3,577,470 + PGA1_c34140 0.31 +2.3
3,577,470 + PGA1_c34140 0.31 -1.2
3,577,478 - PGA1_c34140 0.31 -1.6
3,577,478 - PGA1_c34140 0.31 +0.5
3,577,499 - PGA1_c34140 0.34 -0.6
3,577,519 - PGA1_c34140 0.36 +0.1
3,577,629 - PGA1_c34140 0.48 +0.7
3,577,631 + PGA1_c34140 0.48 +0.3
3,577,631 + PGA1_c34140 0.48 +1.9
3,577,787 - PGA1_c34140 0.65 -1.2
3,577,831 + PGA1_c34140 0.69 +1.0
3,577,839 - PGA1_c34140 0.70 +0.4
3,577,839 - PGA1_c34140 0.70 -0.1
3,577,858 - PGA1_c34140 0.72 -0.9
3,577,927 - PGA1_c34140 0.80 +0.5
3,577,998 + PGA1_c34140 0.87 +1.0
3,578,006 - PGA1_c34140 0.88 -0.6
3,578,079 - -0.1
3,578,153 + PGA1_c34150 0.17 -0.9
3,578,153 + PGA1_c34150 0.17 +2.1
3,578,171 - PGA1_c34150 0.24 -1.7
3,578,400 + -0.4
3,578,650 + PGA1_c34160 0.31 +0.1
3,578,803 + PGA1_c34160 0.48 +1.1
3,578,834 - PGA1_c34160 0.51 +0.1

Or see this region's nucleotide sequence